Os07g0613600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0613600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 346.68 | 0.875 | 3.48 | 0.738 | 0.0222 | -0.675 | -0.883 | -1.75 | -0.202 | 3.71 | 1014 | 9621 | -- | -- |
| 353.51 | 0.876 | 3.41 | 1.52 | 0.00119 | -1 | 0.934 | -- | -0.0187 | 15.8 | 1011 | 25370 | -- | -- |
| 348.03 | 0.869 | 3.48 | 0.693 | 0.0493 | -0.715 | -- | -1.96 | -0.21 | 2.51 | 1014 | 10013 | -- | -- |
| 355.5 | 0.878 | 3.4 | 1.56 | 0.0304 | -1 | -- | -- | 0.0225 | 3.42 | 1011 | 25284 | -- | -- |
| 348.18 | 0.869 | 3.48 | 0.726 | -- | -0.733 | -- | -1.9 | -0.211 | -- | 1014 | 10000 | -- | -- |
| 381.19 | 0.915 | 3.46 | 1.09 | 0.0135 | -- | 0.952 | -- | -0.235 | 16 | -- | -- | -- | -- |
| 382.67 | 0.916 | 3.46 | 1.1 | 0.14 | -- | -- | -- | -0.23 | 21.2 | -- | -- | -- | -- |
| 355.55 | 0.878 | 3.4 | 1.56 | -- | -0.998 | -- | -- | 0.0217 | -- | 1011 | 25371 | -- | -- |
| 408.64 | 0.941 | 3.47 | -- | 0.0593 | -0.441 | -- | -- | -0.269 | 2.97 | 1011 | 25146 | -- | -- |
| 383.82 | 0.915 | 3.45 | 1.1 | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
| 414.63 | 0.953 | 3.49 | -- | 0.142 | -- | -- | -- | -0.352 | 21.8 | -- | -- | -- | -- |
| 402.74 | 0.935 | 3.46 | -- | -- | -0.644 | -- | -- | -0.267 | -- | 1008 | 11580 | -- | -- |
| 415.82 | 0.952 | 3.48 | -- | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 345.39 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 14 | 345.48 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 21 | NA |
| 49 | 345.51 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 12 | 14 |
| 182 | 345.56 | atmosphere | 1010 | 14400 | > th | dose dependent | no | NA | NA |
| 218 | 345.57 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 242 | 345.59 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 243 | 345.59 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 445 | 345.81 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 567 | 346.13 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 578 | 346.56 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 582 | 346.76 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 607 | 347.39 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 620 | 347.45 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 635 | 347.52 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 647 | 347.56 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 655 | 347.58 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 664 | 347.61 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 722 | 347.72 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 742 | 347.76 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 23 | NA |
| 744 | 347.76 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 759 | 347.80 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 1 | NA |
| 761 | 347.80 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 767 | 347.81 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 773 | 347.81 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 804 | 347.84 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 840 | 347.90 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 884 | 347.95 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 22 | 21 |
| 896 | 347.97 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 899 | 347.97 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 904 | 347.97 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 924 | 348.00 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 983 | 348.06 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 7 |