Os07g0613500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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Os07g0613500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.35 | 0.391 | 12.6 | 0.121 | 1.36 | 0.926 | 1.22 | -5.37 | -0.256 | 8.99 | 26.7 | 10 | -- | -- |
| 76.26 | 0.41 | 12.5 | 0.571 | 1.38 | 0.485 | 1.04 | -- | -0.166 | 8.97 | 26.25 | 19 | -- | -- |
| 74.25 | 0.404 | 12.6 | 0.209 | 1.36 | 0.925 | -- | -4.88 | -0.244 | 8.85 | 26.7 | 10 | -- | -- |
| 79.95 | 0.419 | 12.5 | 0.605 | 1.38 | 0.509 | -- | -- | -0.167 | 8.91 | 26.18 | 9 | -- | -- |
| 178.98 | 0.626 | 12.7 | 0.0663 | -- | 1.17 | -- | -6.49 | -0.264 | -- | 26.7 | 10 | -- | -- |
| 79.66 | 0.418 | 12.5 | 0.636 | 1.4 | -- | 1.04 | -- | -0.15 | 9.41 | -- | -- | -- | -- |
| 83.61 | 0.428 | 12.5 | 0.673 | 1.4 | -- | -- | -- | -0.15 | 9.36 | -- | -- | -- | -- |
| 188.64 | 0.642 | 12.6 | 0.585 | -- | 0.642 | -- | -- | -0.17 | -- | 25.7 | 4 | -- | -- |
| 89.24 | 0.44 | 12.6 | -- | 1.39 | 0.638 | -- | -- | -0.246 | 8.69 | 25.7 | 12 | -- | -- |
| 197.55 | 0.657 | 12.6 | 0.666 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 95.56 | 0.457 | 12.6 | -- | 1.4 | -- | -- | -- | -0.225 | 9.32 | -- | -- | -- | -- |
| 197.25 | 0.654 | 12.6 | -- | -- | 0.728 | -- | -- | -0.239 | -- | 25.7 | 2 | -- | -- |
| 209.25 | 0.675 | 12.6 | -- | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.13 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 22 | 67.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 2 |
| 31 | 68.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 34 | 68.24 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 47 | 68.75 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 48 | 68.76 | temperature | 25.0 | 270 | < th | dose independent | sin | 3 | NA |
| 50 | 68.86 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 51 | 68.87 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 54 | 68.88 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 56 | 68.89 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 66 | 69.00 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 80 | 69.21 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 84 | 69.28 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 105 | 69.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 111 | 69.40 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 10 |
| 115 | 69.45 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 2 |
| 136 | 69.63 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 18 | 5 |
| 138 | 69.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 139 | 69.65 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 11 |
| 140 | 69.65 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 13 |
| 147 | 69.69 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 10 |
| 160 | 69.77 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 190 | 69.92 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 259 | 70.15 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 289 | 70.19 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 292 | 70.19 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 296 | 70.20 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 301 | 70.21 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 308 | 70.23 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 317 | 70.25 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 8 |
| 322 | 70.26 | temperature | 20.0 | 90 | < th | dose independent | sin | 12 | NA |
| 390 | 70.38 | temperature | 25.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 427 | 70.43 | temperature | 25.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 446 | 70.47 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 453 | 70.48 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 473 | 70.51 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 495 | 70.55 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 516 | 70.58 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 546 | 70.64 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 565 | 70.67 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 16 |
| 575 | 70.69 | temperature | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 582 | 70.70 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 595 | 70.72 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 621 | 70.77 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 626 | 70.78 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 633 | 70.79 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 648 | 70.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 653 | 70.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 659 | 70.82 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 668 | 70.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 706 | 70.88 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 734 | 70.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 739 | 70.93 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 742 | 70.93 | temperature | 25.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 743 | 70.93 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 758 | 70.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 766 | 70.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 790 | 70.98 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 21 |
| 793 | 70.99 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 797 | 70.99 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 802 | 70.99 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 819 | 71.00 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 830 | 71.01 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 876 | 71.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 879 | 71.07 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 899 | 71.08 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 917 | 71.10 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 936 | 71.12 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 960 | 71.14 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |