Os07g0613200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L27a-3.
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Os07g0613200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L27a-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.95 | 0.376 | 12.4 | 0.799 | 0.468 | 0.685 | 1.1 | 2.09 | 0.242 | 19.9 | 18.55 | 114 | -- | -- |
| 69.11 | 0.387 | 12.4 | 0.841 | 0.471 | 0.478 | 0.808 | -- | 0.255 | 19 | 16.54 | 125 | -- | -- |
| 66.9 | 0.381 | 12.4 | 0.775 | 0.461 | 0.628 | -- | 1.79 | 0.252 | 19.3 | 21.07 | 127 | -- | -- |
| 70.71 | 0.392 | 12.4 | 0.793 | 0.469 | 0.481 | -- | -- | 0.254 | 19.6 | 7.593 | 125 | -- | -- |
| 75.05 | 0.403 | 12.3 | 0.905 | -- | 0.424 | -- | 1.71 | 0.303 | -- | 19.45 | 765 | -- | -- |
| 72.01 | 0.398 | 12.4 | 0.804 | 0.495 | -- | 0.923 | -- | 0.275 | 17.8 | -- | -- | -- | -- |
| 74.1 | 0.403 | 12.4 | 0.798 | 0.5 | -- | -- | -- | 0.278 | 17.7 | -- | -- | -- | -- |
| 76.91 | 0.408 | 12.4 | 0.757 | -- | 0.529 | -- | -- | 0.216 | -- | -14.82 | 716 | -- | -- |
| 87.28 | 0.435 | 12.4 | -- | 0.462 | 0.495 | -- | -- | 0.159 | 19.6 | 9.516 | 126 | -- | -- |
| 87.07 | 0.436 | 12.4 | 0.783 | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
| 90.9 | 0.446 | 12.4 | -- | 0.487 | -- | -- | -- | 0.189 | 17.8 | -- | -- | -- | -- |
| 91.98 | 0.447 | 12.4 | -- | -- | 0.557 | -- | -- | 0.129 | -- | -0.1552 | 722 | -- | -- |
| 103.22 | 0.474 | 12.4 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.78 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 59.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 8 | 59.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 14 | 59.68 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 16 | 59.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 34 | 60.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 41 | 60.34 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 49 | 60.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 50 | 60.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 91 | 60.89 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 112 | 61.02 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 12 |
| 127 | 61.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 186 | 61.46 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 326 | 62.17 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 338 | 62.23 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 403 | 62.49 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 453 | 62.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 479 | 62.72 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 492 | 62.81 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 15 |
| 525 | 62.89 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 15 |
| 585 | 63.00 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 644 | 63.16 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 711 | 63.25 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 15 |
| 733 | 63.30 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 812 | 63.43 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 930 | 63.57 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 968 | 63.63 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 973 | 63.64 | radiation | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 976 | 63.65 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 979 | 63.66 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 2 |
| 996 | 63.68 | radiation | 20 | 90 | > th | dose dependent | sin | 4 | NA |