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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0612500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor TAFII-31 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.017) R2 : 0.348
β1 : 0.177 (0.0613) R2dD : 0.0129 R2D : -0.0238
β2 : -- (--) R2dC : -- R2C : --
β3 : 8.42 (0.566) R2dE : 3.26 R2E : -2.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.5 (1.37) R2dD*E : 2.38 R2D*E : -2.85
γ1 : 0.088 (0.0351) R2dN8 : 0.0121 R2N8 : -0.0144
σ : 0.307
deviance : 43.4
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.1
memory length : 13
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.8 0.307 3.14 0.176 0.104 8.39 -0.0324 17.5 0.0863 8.28 7.1 12 12 1.1
69.27 0.388 3.11 0.199 0.0972 1.61 -0.198 -- 0.0353 7.77 10.8 141 13 2.95
42.8 0.305 3.14 0.175 0.104 8.4 -- 17.5 0.0864 8.33 7.103 13 12 1.14
65.23 0.376 3.09 -0.00141 0.125 -0.104 -- -- 0.0671 9.29 8.801 84 13.4 4.35
43.4 0.307 3.14 0.177 -- 8.42 -- 17.5 0.088 -- 7.1 13 12 1.15
65.22 0.379 3.09 0.00641 0.126 -- -0.0968 -- 0.0695 9.19 -- -- -- --
65.26 0.378 3.09 0.00302 0.126 -- -- -- 0.0694 9.23 -- -- -- --
65.03 0.376 3.09 0.0374 -- 0.434 -- -- 0.0914 -- 6.059 35 11.4 4.15
65.22 0.376 3.09 -- 0.126 -0.127 -- -- 0.0657 9.3 8.857 82 12.6 4.73
66.18 0.38 3.09 0.00254 -- -- -- -- 0.07 -- -- -- -- --
65.26 0.378 3.09 -- 0.126 -- -- -- 0.0691 9.23 -- -- -- --
64.44 0.374 3.09 -- -- 0.611 -- -- 0.104 -- 5.058 28 11.2 2.48
66.18 0.38 3.09 -- -- -- -- -- 0.0697 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.94 wind 7.0 10 > th dose dependent rect. 12 1
3 47.35 wind 7.0 10 > th dose independent rect. 12 1
5 54.36 wind 9.0 270 > th dose dependent rect. 9 1
20 57.03 wind 9.0 270 > th dose independent rect. 9 1
51 60.38 wind 1.0 30 < th dose independent rect. 10 1
52 60.38 temperature 10.0 1440 > th dose independent rect. 11 1
56 60.38 atmosphere 995.0 1440 > th dose independent rect. 11 1
59 60.38 precipitation 0.1 1440 < th dose independent rect. 11 1
60 60.38 temperature 10.0 1440 > th dose independent rect. 12 23
63 60.38 wind 1.0 30 < th dose dependent rect. 10 1
64 60.38 precipitation 0.1 1440 < th dose dependent rect. 11 1
66 60.56 humidity 70.0 30 < th dose independent rect. 10 1
68 60.57 temperature 25.0 30 > th dose dependent rect. 10 1
70 60.76 radiation 20.0 30 > th dose independent rect. 10 1
72 60.77 humidity 80.0 30 < th dose dependent rect. 10 1
78 60.88 atmosphere 1010.0 30 < th dose independent rect. 10 1
80 60.91 temperature 25.0 30 > th dose independent rect. 10 1
81 60.95 atmosphere 1005.0 30 > th dose independent rect. 10 1
85 60.99 atmosphere 1000.0 30 > th dose dependent rect. 10 1
86 61.00 radiation 40.0 30 < th dose independent rect. 10 1
95 61.10 radiation 1.0 30 > th dose dependent rect. 10 1
96 61.11 temperature 30.0 30 < th dose independent rect. 10 1
97 61.12 humidity 60.0 30 > th dose independent rect. 10 1
98 61.13 wind 5.0 30 < th dose independent rect. 10 1
100 61.13 wind 7.0 30 < th dose dependent rect. 10 1
103 61.15 temperature 10.0 30 > th dose independent rect. 10 1
110 61.15 precipitation 0.1 30 < th dose independent rect. 10 1
111 61.15 temperature 10.0 30 > th dose independent rect. 11 23
114 61.15 precipitation 0.1 30 < th dose dependent rect. 10 1
119 61.18 wind 1.0 30 > th dose independent rect. 10 1
132 61.55 wind 1.0 30 > th dose dependent rect. 10 1
133 61.58 atmosphere 1015.0 30 < th dose dependent rect. 10 1
138 61.67 radiation 40.0 30 < th dose dependent rect. 10 1
144 61.76 wind 5.0 720 > th dose independent rect. 24 7
153 61.82 humidity 50.0 30 > th dose dependent rect. 10 1
161 61.86 temperature 25.0 90 > th dose dependent rect. 3 9
172 61.88 temperature 25.0 90 > th dose dependent rect. 20 16
216 62.04 wind 5.0 720 < th dose independent rect. 24 9
217 62.04 wind 3.0 720 > th dose dependent rect. 1 2
277 62.15 temperature 25.0 10 > th dose dependent rect. 22 15
462 62.58 wind 9.0 30 < th dose independent rect. 11 23
483 62.62 temperature 25.0 270 > th dose independent rect. 1 10
579 62.79 temperature 25.0 90 > th dose independent rect. 3 10
638 62.88 wind 7.0 720 < th dose dependent rect. 24 9
673 62.93 temperature 25.0 10 > th dose dependent sin 6 NA
780 63.11 humidity 90.0 10 < th dose independent rect. 4 1
927 63.28 wind 3.0 14400 < th dose independent rect. 2 2
938 63.28 temperature 15.0 30 > th dose dependent rect. 14 20
946 63.29 temperature 15.0 10 > th dose dependent rect. 14 14
966 63.33 wind 3.0 14400 > th dose independent rect. 2 2
987 63.36 wind 1.0 30 > th dose independent rect. 4 1