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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0612400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha/beta hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0204) R2 : 0.00375
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0562 (0.0429) R2dN8 : 0.00484 R2N8 : 0.00375
σ : 0.384
deviance : 67.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.29 0.368 3.31 0.153 0.252 -0.0763 -0.338 -1.23 -0.0465 6.27 70.87 4947 -- --
63.04 0.37 3.31 0.0869 0.229 -0.144 -0.466 -- -0.0909 6.16 86 7295 -- --
61.56 0.365 3.31 0.152 0.245 -0.0665 -- -1.3 -0.0427 6.42 71 4946 -- --
63.54 0.371 3.32 0.0941 0.257 -0.156 -- -- -0.114 6.38 86 7296 -- --
64.57 0.374 3.31 0.172 -- 0.0568 -- -1.39 -0.0212 -- 71 4946 -- --
63.73 0.374 3.31 0.0809 0.247 -- -0.499 -- -0.0543 6.14 -- -- -- --
64.34 0.376 3.31 0.0762 0.244 -- -- -- -0.0523 6.33 -- -- -- --
66.53 0.38 3.33 0.127 -- -0.229 -- -- -0.14 -- 86.12 7003 -- --
63.84 0.372 3.31 -- 0.257 -0.157 -- -- -0.116 6.3 86 7294 -- --
67.44 0.384 3.31 0.0826 -- -- -- -- -0.047 -- -- -- -- --
64.49 0.376 3.31 -- 0.245 -- -- -- -0.0608 6.31 -- -- -- --
66.92 0.381 3.33 -- -- -0.183 -- -- -0.138 -- 86 7032 -- --
67.62 0.384 3.31 -- -- -- -- -- -0.0562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.55 radiation 10.0 30 > th dose independent rect. 7 1
2 57.56 humidity 80.0 10 < th dose independent rect. 6 2
6 57.96 humidity 80.0 10 < th dose independent rect. 23 9
11 58.13 wind 1.0 10 < th dose independent rect. 13 1
13 58.13 wind 1.0 10 < th dose dependent rect. 13 1
29 58.25 atmosphere 1000.0 90 < th dose independent rect. 13 1
31 58.25 atmosphere 1000.0 10 < th dose dependent rect. 13 1
56 58.56 radiation 10.0 10 > th dose independent rect. 16 16
57 58.61 atmosphere 1000.0 30 > th dose independent rect. 3 23
62 58.79 radiation 40.0 10 > th dose dependent rect. 14 1
108 59.05 atmosphere 1005.0 10 > th dose dependent rect. 2 2
109 59.06 atmosphere 1005.0 90 > th dose dependent rect. 2 1
112 59.20 temperature 25.0 90 > th dose dependent rect. 1 3
114 59.25 temperature 25.0 90 > th dose independent rect. 1 3
123 59.49 radiation 1.0 43200 < th dose dependent rect. 3 1
143 59.73 atmosphere 1010.0 30 < th dose dependent rect. 2 1
144 59.74 humidity 90.0 30 > th dose dependent rect. 2 1
151 59.84 humidity 90.0 10 > th dose independent rect. 2 1
153 59.84 temperature 30.0 30 < th dose dependent rect. 2 1
154 59.85 wind 1.0 30 > th dose independent rect. 2 1
155 59.85 wind 5.0 30 < th dose independent rect. 2 1
159 59.86 temperature 10.0 30 > th dose independent rect. 2 1
161 59.86 temperature 30.0 30 < th dose independent rect. 2 1
162 59.86 humidity 50.0 30 > th dose independent rect. 2 1
165 59.86 atmosphere 995.0 30 > th dose independent rect. 2 1
166 59.86 atmosphere 1010.0 30 < th dose independent rect. 2 1
168 59.86 radiation 1.0 30 < th dose independent rect. 2 1
173 59.86 precipitation 0.1 30 < th dose independent rect. 2 1
174 59.86 temperature 10.0 30 > th dose independent rect. 3 23
175 59.86 wind 7.0 30 < th dose dependent rect. 2 1
177 59.86 humidity 50.0 30 > th dose dependent rect. 2 1
180 59.86 radiation 1.0 30 < th dose dependent rect. 2 1
185 59.86 precipitation 0.1 30 < th dose dependent rect. 2 1
194 59.88 temperature 10.0 30 > th dose dependent rect. 2 1
200 59.89 atmosphere 995.0 30 > th dose dependent rect. 2 1
250 59.97 precipitation 0.1 10 < th dose independent rect. 3 23
252 59.97 humidity 80.0 14400 < th dose dependent rect. 3 6
253 59.97 precipitation 0.1 10 < th dose dependent rect. 3 23
255 59.98 radiation 40.0 10 > th dose independent rect. 14 1
303 60.04 atmosphere 1000.0 30 > th dose independent rect. 8 23
304 60.04 humidity 90.0 10 < th dose dependent rect. 7 1
322 60.11 wind 9.0 1440 < th dose independent rect. 3 1
323 60.11 temperature 10.0 1440 > th dose independent rect. 3 1
326 60.11 temperature 30.0 1440 < th dose independent rect. 3 1
330 60.11 humidity 50.0 1440 > th dose independent rect. 3 1
339 60.11 atmosphere 995.0 1440 > th dose independent rect. 3 1
340 60.11 radiation 1.0 1440 < th dose independent rect. 3 1
360 60.11 temperature 10.0 1440 > th dose independent rect. 4 23
372 60.11 humidity 90.0 90 < th dose dependent rect. 2 6
379 60.14 wind 9.0 30 < th dose independent rect. 3 23
385 60.21 atmosphere 1000.0 10 < th dose dependent rect. 13 8
390 60.25 humidity 90.0 90 < th dose independent rect. 2 3
407 60.43 humidity 50.0 30 > th dose independent rect. 3 23
421 60.53 humidity 70.0 14400 > th dose independent rect. 8 1
422 60.53 wind 5.0 14400 < th dose independent rect. 9 8
429 60.55 atmosphere 1000.0 10 < th dose dependent rect. 13 14
431 60.56 humidity 80.0 14400 < th dose dependent rect. 21 13
435 60.58 wind 5.0 14400 > th dose independent rect. 9 8
438 60.59 humidity 90.0 90 < th dose independent rect. 2 1
440 60.59 atmosphere 1000.0 10 < th dose dependent rect. 13 21
466 60.66 humidity 70.0 14400 > th dose independent rect. 4 5
467 60.66 humidity 70.0 14400 > th dose independent rect. 22 11
470 60.67 humidity 70.0 14400 > th dose independent rect. 6 3
482 60.68 radiation 1.0 10 > th dose dependent rect. 7 1
521 60.75 temperature 25.0 30 > th dose independent rect. 7 1
522 60.75 humidity 70.0 14400 < th dose independent rect. 8 1
527 60.76 atmosphere 1005.0 30 > th dose independent rect. 7 1
536 60.77 atmosphere 1000.0 10 < th dose dependent rect. 13 19
574 60.85 humidity 50.0 14400 > th dose dependent rect. 8 1
592 60.88 humidity 70.0 14400 < th dose independent rect. 7 3
614 60.90 atmosphere 1000.0 10 < th dose independent rect. 13 9
629 60.91 atmosphere 1000.0 30 < th dose independent rect. 13 7
642 60.92 humidity 90.0 720 < th dose independent rect. 1 3
648 60.92 radiation 40.0 10 > th dose dependent sin 13 NA
664 60.96 wind 5.0 14400 < th dose independent rect. 11 1
671 60.96 humidity 80.0 14400 < th dose independent rect. 6 7
676 60.96 humidity 50.0 4320 > th dose dependent rect. 11 1
679 60.97 radiation 40.0 10 > th dose independent sin 13 NA
688 60.98 atmosphere 1000.0 270 < th dose independent rect. 10 4
690 60.98 radiation 10.0 10 > th dose independent rect. 13 19
704 60.99 atmosphere 1000.0 10 < th dose dependent rect. 7 20
731 61.02 radiation 10.0 30 < th dose dependent rect. 3 23
737 61.03 atmosphere 1000.0 30 > th dose independent rect. 8 18
739 61.03 atmosphere 1000.0 90 < th dose dependent rect. 6 8
745 61.04 wind 5.0 30 < th dose independent rect. 7 1
751 61.04 atmosphere 1000.0 90 > th dose independent rect. 8 11
752 61.04 atmosphere 995.0 720 > th dose independent rect. 23 16
771 61.06 wind 3.0 14400 > th dose independent rect. 19 1
772 61.06 humidity 70.0 4320 > th dose independent rect. 10 1
773 61.06 humidity 60.0 14400 < th dose independent rect. 11 1
778 61.06 atmosphere 1000.0 10 < th dose dependent sin 20 NA
779 61.06 humidity 90.0 4320 < th dose dependent rect. 11 2
791 61.07 atmosphere 1000.0 10 > th dose independent rect. 11 23
805 61.08 wind 3.0 14400 > th dose dependent rect. 9 7
807 61.09 wind 1.0 30 > th dose independent rect. 7 1
815 61.09 wind 5.0 14400 < th dose dependent rect. 11 1
828 61.11 wind 5.0 14400 < th dose independent sin 23 NA
834 61.11 wind 5.0 14400 < th dose independent rect. 10 17
836 61.11 atmosphere 1000.0 30 > th dose independent rect. 11 21
846 61.12 humidity 80.0 14400 > th dose independent rect. 6 7
851 61.12 wind 5.0 14400 > th dose independent rect. 23 18
852 61.12 wind 5.0 14400 < th dose independent rect. 23 18
872 61.13 atmosphere 1000.0 90 < th dose dependent rect. 24 14
873 61.13 atmosphere 1000.0 10 < th dose dependent rect. 24 15
876 61.13 atmosphere 1000.0 10 < th dose dependent rect. 1 21
890 61.14 humidity 80.0 14400 > th dose independent rect. 23 15
908 61.14 atmosphere 1000.0 10 < th dose dependent rect. 16 23
917 61.15 radiation 10.0 30 < th dose independent rect. 3 23
923 61.15 atmosphere 1000.0 10 < th dose dependent rect. 7 8
924 61.15 atmosphere 1000.0 10 < th dose dependent rect. 7 13
962 61.17 wind 5.0 14400 > th dose independent sin 23 NA
971 61.17 wind 5.0 14400 > th dose independent rect. 10 17
979 61.17 humidity 80.0 10 < th dose dependent rect. 23 9
999 61.18 wind 1.0 14400 < th dose dependent rect. 6 1
1000 61.18 wind 7.0 10 < th dose dependent rect. 7 1