Os07g0609000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dimeric alpha-beta barrel domain containing protein.
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Os07g0609000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dimeric alpha-beta barrel domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.29 | 0.259 | 11.9 | -0.294 | 1.13 | -0.348 | 0.414 | -1.13 | -0.363 | 17.6 | 31.37 | 1197 | -- | -- |
| 30.35 | 0.257 | 11.9 | -0.126 | 1.14 | -0.476 | 0.394 | -- | -0.363 | 17.6 | 31.4 | 1192 | -- | -- |
| 30.71 | 0.258 | 11.9 | -0.314 | 1.13 | -0.338 | -- | -1.25 | -0.362 | 17.6 | 31.3 | 1198 | -- | -- |
| 30.77 | 0.258 | 11.9 | -0.117 | 1.13 | -0.479 | -- | -- | -0.361 | 17.6 | 31.57 | 1201 | -- | -- |
| 96.07 | 0.457 | 12 | -0.766 | -- | -0.127 | -- | -3.85 | -0.409 | -- | 31.08 | 1251 | -- | -- |
| 41.12 | 0.301 | 11.9 | -0.231 | 1.16 | -- | 0.525 | -- | -0.276 | 17.3 | -- | -- | -- | -- |
| 41.8 | 0.303 | 11.9 | -0.232 | 1.16 | -- | -- | -- | -0.273 | 17.4 | -- | -- | -- | -- |
| 96.75 | 0.458 | 11.9 | -0.133 | -- | -0.565 | -- | -- | -0.405 | -- | 31.88 | 1251 | -- | -- |
| 31.1 | 0.26 | 11.9 | -- | 1.13 | -0.495 | -- | -- | -0.353 | 17.6 | 31.39 | 1203 | -- | -- |
| 112.51 | 0.496 | 11.9 | -0.272 | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
| 43.23 | 0.308 | 11.9 | -- | 1.17 | -- | -- | -- | -0.248 | 17.4 | -- | -- | -- | -- |
| 97.17 | 0.459 | 11.9 | -- | -- | -0.579 | -- | -- | -0.394 | -- | 31.68 | 1257 | -- | -- |
| 114.47 | 0.499 | 11.9 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.42 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 30 | 29.61 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 35 | 29.95 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 64 | 30.15 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 65 | 30.15 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 67 | 30.20 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 68 | 30.21 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 69 | 30.21 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 72 | 30.24 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 73 | 30.24 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 106 | 30.37 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 107 | 30.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 109 | 30.41 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 112 | 30.46 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 131 | 30.48 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 134 | 30.49 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 135 | 30.50 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 151 | 30.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 157 | 30.59 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 159 | 30.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 160 | 30.61 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 195 | 30.66 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 197 | 30.67 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 235 | 30.72 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 283 | 30.77 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 284 | 30.78 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 286 | 30.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 287 | 30.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 290 | 30.80 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 296 | 30.82 | humidity | 80 | 1440 | < th | dose dependent | sin | 12 | NA |
| 303 | 30.84 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 311 | 30.86 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 327 | 30.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 345 | 30.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 356 | 30.94 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 420 | 31.04 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 424 | 31.06 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 451 | 31.07 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 457 | 31.09 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 460 | 31.09 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 8 |
| 461 | 31.10 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 463 | 31.10 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 468 | 31.11 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 473 | 31.12 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 479 | 31.13 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 486 | 31.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 506 | 31.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 544 | 31.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 18 |
| 579 | 31.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 589 | 31.21 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 15 |
| 599 | 31.22 | wind | 5 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 601 | 31.22 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 610 | 31.23 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 642 | 31.24 | temperature | 25 | 14400 | > th | dose dependent | sin | 16 | NA |
| 661 | 31.25 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 680 | 31.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 9 |
| 689 | 31.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 706 | 31.27 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 741 | 31.29 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 760 | 31.30 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 773 | 31.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 831 | 31.32 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 848 | 31.33 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 854 | 31.33 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 923 | 31.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 926 | 31.35 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 928 | 31.35 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 943 | 31.35 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 944 | 31.35 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 22 |
| 949 | 31.35 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 958 | 31.36 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 985 | 31.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 988 | 31.37 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 989 | 31.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 990 | 31.37 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 5 |