Os07g0608500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein S3 (Fragment).
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Os07g0608500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein S3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.64 | 0.366 | 10.7 | 0.303 | 0.684 | -0.492 | 0.771 | -1.89 | -0.438 | 16.2 | 0.09587 | 16966 | -- | -- |
| 61.04 | 0.364 | 10.7 | 0.55 | 0.668 | -0.93 | 0.672 | -- | -0.449 | 16.5 | 0.4941 | 20427 | -- | -- |
| 61.98 | 0.367 | 10.7 | 0.3 | 0.674 | -0.536 | -- | -1.74 | -0.44 | 16.3 | 0.2508 | 16874 | -- | -- |
| 62.32 | 0.368 | 10.7 | 0.52 | 0.696 | -0.952 | -- | -- | -0.468 | 16.4 | 0.4863 | 20332 | -- | -- |
| 86.58 | 0.433 | 10.7 | 0.32 | -- | -0.537 | -- | -1.64 | -0.456 | -- | 0.4653 | 19431 | -- | -- |
| 80.74 | 0.421 | 10.6 | 0.0478 | 0.668 | -- | 0.691 | -- | -0.356 | 16.4 | -- | -- | -- | -- |
| 82.02 | 0.424 | 10.6 | 0.0534 | 0.674 | -- | -- | -- | -0.352 | 16.5 | -- | -- | -- | -- |
| 86.88 | 0.434 | 10.7 | 0.42 | -- | -0.966 | -- | -- | -0.482 | -- | 0.4787 | 19538 | -- | -- |
| 65.81 | 0.378 | 10.7 | -- | 0.676 | -0.801 | -- | -- | -0.493 | 16.5 | 0.4136 | 19523 | -- | -- |
| 106.32 | 0.482 | 10.6 | 0.0272 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 82.09 | 0.424 | 10.6 | -- | 0.673 | -- | -- | -- | -0.358 | 16.5 | -- | -- | -- | -- |
| 90.06 | 0.442 | 10.7 | -- | -- | -0.808 | -- | -- | -0.512 | -- | 0.3983 | 16652 | -- | -- |
| 106.34 | 0.481 | 10.6 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.23 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 2 | 61.48 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 4 | 61.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 5 | 61.74 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 6 | 61.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 10 | 61.79 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 11 | 61.79 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 17 |
| 12 | 61.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 17 | 61.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 18 | 61.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 20 | 61.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 21 | 61.87 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 44 | 62.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 47 | 62.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 49 | 62.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 75 | 62.21 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 79 | 62.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 90 | 62.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 110 | 62.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 116 | 62.37 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 119 | 62.38 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 150 | 62.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 189 | 62.59 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 208 | 62.62 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 3 | NA |
| 219 | 62.65 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 232 | 62.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 240 | 62.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 248 | 62.70 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 249 | 62.70 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 259 | 62.72 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 313 | 62.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 320 | 62.88 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 330 | 62.90 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 360 | 62.95 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 372 | 62.97 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 381 | 63.00 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 383 | 63.00 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 384 | 63.00 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 386 | 63.00 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 394 | 63.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 418 | 63.04 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 420 | 63.05 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 440 | 63.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 446 | 63.09 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 493 | 63.15 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 501 | 63.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 16 |
| 508 | 63.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 511 | 63.17 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 516 | 63.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 16 |
| 525 | 63.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 532 | 63.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 533 | 63.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 15 |
| 534 | 63.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 555 | 63.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 14 |
| 561 | 63.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 14 |
| 576 | 63.25 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 2 | NA |
| 581 | 63.25 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 2 | NA |
| 585 | 63.26 | humidity | 80.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 600 | 63.27 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 16 |
| 619 | 63.29 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |
| 755 | 63.41 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 761 | 63.42 | humidity | 80.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 843 | 63.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 849 | 63.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 870 | 63.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |