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Os07g0605800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to STF-1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.022) R2 : 0.00606
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0774 (0.0464) R2dN8 : 0.00782 R2N8 : 0.00606
σ : 0.415
deviance : 79.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.7 0.347 10.4 0.442 0.703 -0.546 0.0188 0.843 -0.125 6.52 90.72 266 -- --
55.4 0.347 10.4 0.448 0.7 -0.585 0.382 -- -0.127 6.53 92.01 272 -- --
54.7 0.344 10.4 0.442 0.703 -0.546 -- 0.851 -0.125 6.52 90.73 265 -- --
55.74 0.348 10.4 0.461 0.694 -0.572 -- -- -0.117 6.55 92 272 -- --
71.83 0.395 10.4 0.31 -- 0.27 -- 0.577 0.0155 -- 87.82 600 -- --
60.2 0.364 10.4 0.414 0.516 -- 0.146 -- -0.039 7.07 -- -- -- --
60.25 0.364 10.4 0.416 0.516 -- -- -- -0.0394 7.05 -- -- -- --
70.57 0.391 10.4 0.533 -- 0.529 -- -- 0.0617 -- 70.61 495 -- --
61.27 0.365 10.4 -- 0.676 -0.523 -- -- -0.157 6.59 92.3 278 -- --
74.3 0.403 10.4 0.427 -- -- -- -- -0.0301 -- -- -- -- --
64.82 0.377 10.4 -- 0.521 -- -- -- -0.0858 7 -- -- -- --
72.96 0.398 10.4 -- -- 0.425 -- -- -0.0504 -- 65 497 -- --
79.1 0.415 10.4 -- -- -- -- -- -0.0774 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.06 humidity 90.0 10 < th dose independent rect. 20 18
2 54.08 wind 3.0 90 > th dose independent rect. 14 5
4 54.33 wind 5.0 90 < th dose independent rect. 19 22
5 54.38 humidity 90.0 270 < th dose independent rect. 17 21
11 54.57 atmosphere 1005.0 270 > th dose independent rect. 14 2
12 54.58 humidity 90.0 270 > th dose dependent rect. 18 20
13 54.59 humidity 90.0 270 > th dose dependent rect. 18 18
16 54.60 humidity 90.0 270 > th dose dependent rect. 20 18
19 54.61 humidity 90.0 10 < th dose independent rect. 4 10
20 54.61 humidity 90.0 270 > th dose dependent rect. 20 16
26 54.64 humidity 90.0 270 > th dose dependent rect. 4 23
54 54.73 humidity 90.0 270 > th dose dependent rect. 20 23
56 54.74 atmosphere 1015.0 10 < th dose dependent rect. 8 8
63 54.77 humidity 90.0 270 > th dose dependent no NA NA
66 54.77 humidity 90.0 270 > th dose dependent rect. 13 23
73 54.79 wind 3.0 270 > th dose independent rect. 14 3
81 54.85 humidity 90.0 270 > th dose dependent rect. 7 23
82 54.87 humidity 90.0 10 < th dose independent rect. 4 12
86 54.88 wind 1.0 14400 < th dose dependent rect. 5 1
90 54.89 humidity 90.0 270 > th dose dependent rect. 10 23
103 54.94 temperature 15.0 270 > th dose independent rect. 17 21
113 54.99 temperature 15.0 90 > th dose independent rect. 19 19
122 55.02 atmosphere 1000.0 30 > th dose independent rect. 5 14
128 55.04 wind 1.0 90 > th dose dependent rect. 14 5
131 55.05 wind 9.0 270 < th dose dependent rect. 8 14
160 55.14 atmosphere 995.0 90 > th dose dependent rect. 14 5
172 55.20 radiation 20.0 1440 > th dose independent rect. 11 2
173 55.20 wind 1.0 270 > th dose dependent rect. 14 3
182 55.22 humidity 90.0 43200 < th dose dependent rect. 6 1
197 55.27 humidity 90.0 10 < th dose independent rect. 24 14
201 55.29 humidity 90.0 270 > th dose dependent sin 9 NA
205 55.30 wind 1.0 14400 < th dose independent rect. 5 1
220 55.34 radiation 10.0 30 < th dose independent rect. 5 14
223 55.35 humidity 90.0 30 > th dose independent sin 3 NA
229 55.36 atmosphere 995.0 90 > th dose independent rect. 14 5
232 55.36 atmosphere 995.0 30 > th dose dependent rect. 5 14
235 55.37 wind 5.0 270 < th dose independent rect. 8 15
245 55.41 humidity 90.0 270 > th dose independent rect. 21 15
259 55.43 wind 1.0 14400 > th dose independent rect. 5 1
263 55.43 wind 9.0 90 < th dose dependent rect. 19 21
276 55.44 wind 1.0 90 > th dose dependent rect. 14 18
281 55.46 wind 1.0 14400 < th dose independent rect. 24 6
334 55.53 wind 5.0 270 < th dose independent rect. 7 7
335 55.53 humidity 90.0 90 < th dose independent rect. 7 7
336 55.53 humidity 90.0 90 > th dose independent rect. 24 14
338 55.53 wind 1.0 14400 < th dose dependent rect. 24 6
345 55.54 wind 5.0 90 < th dose independent rect. 8 21
348 55.54 wind 9.0 270 < th dose dependent rect. 17 21
357 55.55 radiation 10.0 1440 < th dose dependent rect. 8 8
360 55.56 atmosphere 995.0 270 > th dose independent rect. 14 3
377 55.57 radiation 40.0 30 < th dose dependent rect. 5 14
391 55.59 wind 5.0 270 < th dose independent rect. 6 21
397 55.60 wind 5.0 270 < th dose independent rect. 8 17
406 55.61 wind 5.0 270 < th dose independent rect. 6 23
407 55.61 humidity 90.0 10 < th dose independent rect. 17 23
427 55.63 humidity 90.0 90 > th dose independent rect. 24 12
436 55.63 humidity 50.0 43200 > th dose dependent rect. 6 1
440 55.64 wind 1.0 14400 > th dose independent rect. 23 7
448 55.64 humidity 90.0 10 < th dose independent rect. 19 23
451 55.64 precipitation 0.1 720 > th dose dependent rect. 23 19
456 55.65 temperature 15.0 270 > th dose independent rect. 8 14
460 55.65 wind 1.0 270 > th dose dependent rect. 12 7
474 55.66 precipitation 0.1 720 > th dose dependent rect. 2 16
486 55.67 wind 5.0 270 < th dose independent rect. 7 19
514 55.69 precipitation 0.1 270 > th dose independent rect. 16 22
516 55.69 atmosphere 995.0 270 > th dose dependent rect. 14 3
530 55.70 wind 9.0 270 < th dose dependent rect. 19 18
540 55.71 radiation 10.0 30 < th dose independent rect. 5 23
549 55.72 temperature 15.0 90 > th dose independent rect. 19 10
560 55.73 atmosphere 995.0 10 > th dose independent rect. 14 6
591 55.76 humidity 90.0 270 < th dose independent rect. 14 3
606 55.77 wind 1.0 14400 > th dose independent rect. 24 3
613 55.78 wind 1.0 14400 < th dose independent rect. 17 14
622 55.79 humidity 90.0 10 < th dose independent sin 6 NA
630 55.79 wind 1.0 90 > th dose dependent rect. 14 14
650 55.81 precipitation 0.1 90 < th dose independent rect. 19 10
657 55.81 wind 9.0 90 < th dose dependent rect. 8 8
658 55.81 precipitation 0.1 90 < th dose dependent rect. 19 10
661 55.81 wind 3.0 90 > th dose dependent rect. 14 21
664 55.82 humidity 90.0 10 < th dose independent rect. 8 8
670 55.82 wind 1.0 90 > th dose dependent rect. 14 9
675 55.83 humidity 90.0 270 > th dose independent sin 8 NA
677 55.83 humidity 90.0 270 < th dose independent sin 8 NA
682 55.83 precipitation 0.1 720 > th dose independent rect. 23 19
689 55.84 wind 3.0 10 > th dose independent rect. 16 3
706 55.85 humidity 50.0 43200 > th dose independent rect. 14 1
707 55.85 wind 1.0 14400 < th dose independent rect. 24 3
708 55.85 temperature 10.0 43200 > th dose independent rect. 15 5
717 55.85 wind 5.0 270 < th dose independent rect. 4 23
723 55.85 wind 1.0 10 > th dose dependent rect. 14 18
727 55.85 wind 3.0 270 > th dose dependent rect. 12 21
729 55.86 precipitation 0.1 720 > th dose independent rect. 2 16
733 55.86 atmosphere 995.0 30 > th dose independent rect. 14 18
747 55.87 wind 1.0 14400 > th dose independent rect. 20 11
756 55.87 precipitation 0.1 270 < th dose independent rect. 17 21
764 55.87 wind 7.0 270 < th dose dependent rect. 6 21
765 55.87 precipitation 0.1 270 < th dose dependent rect. 17 21
767 55.88 temperature 20.0 10 > th dose independent rect. 8 8
776 55.88 wind 1.0 10 > th dose dependent rect. 14 6
780 55.88 atmosphere 995.0 90 > th dose dependent rect. 19 10
794 55.89 wind 5.0 270 > th dose independent rect. 21 21
797 55.89 humidity 90.0 30 > th dose independent rect. 5 23
801 55.89 wind 1.0 14400 < th dose dependent rect. 19 11
804 55.89 wind 3.0 270 > th dose dependent rect. 21 21
811 55.90 wind 1.0 14400 > th dose independent rect. 17 14
826 55.91 wind 3.0 90 > th dose independent rect. 14 9
827 55.91 wind 7.0 90 < th dose independent rect. 19 10
830 55.91 precipitation 0.1 720 > th dose independent rect. 4 14
845 55.92 humidity 70.0 30 < th dose independent rect. 16 3
853 55.92 precipitation 0.1 270 > th dose independent rect. 16 19
859 55.92 precipitation 0.1 720 > th dose dependent sin 1 NA
872 55.93 atmosphere 1000.0 30 > th dose independent rect. 1 18
883 55.94 temperature 20.0 30 > th dose independent rect. 8 6
890 55.94 wind 3.0 90 > th dose independent rect. 14 18
903 55.94 radiation 10.0 1440 < th dose dependent rect. 8 21
919 55.95 wind 1.0 14400 < th dose dependent rect. 17 13
935 55.96 radiation 10.0 1440 < th dose dependent rect. 8 19
950 55.97 radiation 1.0 90 < th dose dependent rect. 19 11
977 55.98 precipitation 0.1 720 > th dose dependent rect. 13 20
1000 55.99 precipitation 0.1 720 > th dose dependent rect. 13 18