Os07g0605600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0605600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.91 | 0.695 | 10.6 | 2.71 | 3.11 | -1.66 | -1.9 | -5.2 | 0.731 | 23.3 | 24.35 | 487 | -- | -- |
| 254.9 | 0.744 | 10.7 | 1.85 | 3.08 | -1.05 | -1.6 | -- | 0.588 | 23.1 | 34.66 | 1151 | -- | -- |
| 228.95 | 0.705 | 10.6 | 2.78 | 3.22 | -1.66 | -- | -5.26 | 0.74 | 23.4 | 24.35 | 356 | -- | -- |
| 265.32 | 0.759 | 10.7 | 1.93 | 3.07 | -1.02 | -- | -- | 0.612 | 23.1 | 39.98 | 1111 | -- | -- |
| 733.75 | 1.26 | 10.6 | 2.29 | -- | -3.33 | -- | -4.43 | 0.365 | -- | 28.8 | 839 | -- | -- |
| 271.8 | 0.773 | 10.6 | 2.19 | 3.2 | -- | -1.5 | -- | 0.788 | 23.2 | -- | -- | -- | -- |
| 281.41 | 0.786 | 10.6 | 2.25 | 3.21 | -- | -- | -- | 0.793 | 23.2 | -- | -- | -- | -- |
| 757.76 | 1.28 | 10.7 | 1.46 | -- | -3.23 | -- | -- | 0.309 | -- | 338.1 | 859 | -- | -- |
| 274.75 | 0.772 | 10.8 | -- | 3.17 | -1.91 | -- | -- | -0.0266 | 23.2 | 93.91 | 47520 | -- | -- |
| 923.99 | 1.42 | 10.5 | 2.33 | -- | -- | -- | -- | 0.821 | -- | -- | -- | -- | -- |
| 414.93 | 0.953 | 10.7 | -- | 3.23 | -- | -- | -- | 0.543 | 23.2 | -- | -- | -- | -- |
| 807.55 | 1.32 | 10.7 | -- | -- | -3.81 | -- | -- | 0.0732 | -- | 359.1 | 869 | -- | -- |
| 1066.95 | 1.52 | 10.6 | -- | -- | -- | -- | -- | 0.563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.05 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 3 | 216.55 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 17 |
| 11 | 218.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 19 | 218.40 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 24 | 218.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 32 | 219.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 44 | 219.71 | temperature | 25 | 270 | < th | dose dependent | sin | 0 | NA |
| 89 | 221.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 95 | 221.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 111 | 221.47 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 133 | 221.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 136 | 221.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 147 | 221.91 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 153 | 221.96 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 214 | 222.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 261 | 223.49 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 263 | 223.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 268 | 223.68 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 17 |
| 313 | 224.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 410 | 225.29 | humidity | 70 | 10 | > th | dose dependent | sin | 3 | NA |
| 525 | 226.12 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 6 |
| 667 | 226.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 692 | 227.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 742 | 227.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 801 | 227.65 | humidity | 80 | 10 | > th | dose independent | sin | 3 | NA |
| 940 | 228.45 | humidity | 70 | 30 | > th | dose dependent | rect. | 11 | 8 |