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Os07g0605400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to EGG APPARATUS-1 protein (ZmEA1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.6 (0.0402) R2 : 0.589
β1 : 0.799 (0.158) R2dD : 0.0281 R2D : 0.0742
β2 : 0.709 (0.103) R2dC : 0.0426 R2C : 0.0226
β3 : -4.17 (0.225) R2dE : 0.385 R2E : 0.49
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.524 (0.0891) R2dN8 : 0.0459 R2N8 : 0.0708
σ : 0.744
deviance : 255.06
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C
peak time of C : 17.1
E
wheather : radiation
threshold : 0.2483
memory length : 1442
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.22 0.73 14.5 1.29 0.739 -5.34 -1.68 -4.79 0.57 17.3 0.4107 1446 -- --
247.58 0.733 14.6 0.811 0.698 -4.21 -1.56 -- 0.543 17.2 0.255 1442 -- --
241.43 0.724 14.5 1.33 0.774 -5.58 -- -5.75 0.599 16.8 0.2575 1438 -- --
255.06 0.744 14.6 0.799 0.709 -4.17 -- -- 0.524 17.1 0.2483 1442 -- --
268.36 0.763 14.5 1.3 -- -5.83 -- -6.22 0.575 -- 0.2367 1450 -- --
438.76 0.982 14.5 1.95 0.715 -- -1.97 -- 1.02 16.8 -- -- -- --
448.82 0.992 14.5 1.94 0.703 -- -- -- 1.01 16.9 -- -- -- --
280.52 0.78 14.6 0.771 -- -4.24 -- -- 0.501 -- 0.24 1452 -- --
269.44 0.765 14.6 -- 0.706 -4.55 -- -- 0.424 16.9 0.2241 1438 -- --
474.84 1.02 14.5 1.92 -- -- -- -- 0.996 -- -- -- -- --
548.31 1.1 14.5 -- 0.668 -- -- -- 0.798 17 -- -- -- --
293.83 0.798 14.6 -- -- -4.65 -- -- 0.408 -- 0.2162 1452 -- --
571.78 1.12 14.5 -- -- -- -- -- 0.783 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.18 radiation 1 1440 < th dose dependent rect. 10 20
14 253.26 radiation 1 1440 < th dose dependent rect. 10 15
23 253.52 radiation 1 1440 < th dose dependent rect. 10 11
59 255.70 radiation 1 1440 < th dose dependent sin 22 NA
88 257.79 wind 7 43200 < th dose independent rect. 13 5
89 257.86 wind 7 43200 > th dose independent rect. 14 2
106 259.76 wind 5 43200 > th dose dependent rect. 14 1
109 260.18 wind 5 43200 > th dose dependent rect. 13 5
113 260.65 radiation 10 43200 < th dose dependent rect. 4 1
114 260.70 radiation 1 1440 < th dose dependent rect. 18 23
117 260.92 radiation 1 1440 < th dose dependent rect. 5 20
118 260.95 radiation 1 1440 < th dose dependent rect. 5 22
119 260.96 radiation 10 43200 < th dose dependent rect. 2 3
125 261.04 radiation 1 1440 < th dose dependent rect. 5 16
140 261.49 radiation 1 1440 < th dose dependent rect. 2 23
143 261.51 radiation 1 1440 < th dose dependent rect. 22 23
145 261.55 radiation 1 1440 < th dose dependent no NA NA
149 261.57 radiation 1 1440 < th dose dependent rect. 24 23
154 261.59 radiation 1 1440 < th dose dependent rect. 20 23
183 261.78 temperature 25 4320 > th dose independent rect. 16 2
187 261.94 temperature 25 4320 < th dose independent rect. 16 2
189 262.14 radiation 10 43200 < th dose dependent rect. 19 10
195 262.50 radiation 10 43200 < th dose dependent rect. 22 7
202 262.77 radiation 1 43200 > th dose dependent rect. 18 11
219 263.38 radiation 1 43200 > th dose dependent rect. 18 1
276 264.99 radiation 1 14400 < th dose dependent rect. 9 1
283 265.20 radiation 1 43200 < th dose independent rect. 18 6
292 265.25 radiation 1 43200 < th dose independent rect. 18 3
294 265.25 radiation 1 43200 < th dose independent rect. 18 9
315 266.09 humidity 70 43200 > th dose independent rect. 8 1
321 266.17 humidity 70 43200 < th dose independent rect. 8 1
377 267.10 radiation 1 1440 > th dose independent rect. 11 19
383 267.19 wind 7 43200 < th dose independent rect. 16 2
393 267.43 radiation 10 43200 < th dose independent rect. 7 1
398 267.50 radiation 1 1440 < th dose dependent rect. 15 23
410 267.65 radiation 1 1440 > th dose independent rect. 11 7
420 267.88 radiation 10 43200 < th dose independent sin 9 NA
421 267.88 radiation 10 43200 < th dose independent rect. 11 21
423 267.93 humidity 60 43200 < th dose independent rect. 8 4
424 267.95 radiation 40 43200 < th dose independent rect. 12 1
426 267.96 radiation 10 43200 < th dose independent rect. 3 6
427 267.96 radiation 10 43200 < th dose independent rect. 1 8
448 268.15 radiation 1 1440 < th dose independent rect. 10 20
459 268.23 humidity 60 43200 < th dose independent rect. 11 1
472 268.30 temperature 25 1440 < th dose independent rect. 11 14
483 268.42 radiation 10 43200 < th dose independent rect. 16 20
541 268.86 radiation 1 43200 < th dose dependent rect. 18 5
543 268.87 radiation 1 43200 < th dose dependent rect. 18 3
549 268.90 wind 5 43200 > th dose dependent rect. 16 2
564 269.01 radiation 10 43200 < th dose independent rect. 3 16
566 269.01 radiation 10 43200 < th dose independent rect. 1 18
570 269.02 radiation 10 43200 < th dose independent no NA NA
635 269.28 radiation 30 43200 < th dose independent rect. 10 1
667 269.51 radiation 40 43200 < th dose independent rect. 10 6
670 269.51 radiation 40 43200 < th dose independent rect. 10 19
679 269.52 radiation 40 43200 < th dose independent rect. 10 16
697 269.59 humidity 60 43200 < th dose dependent rect. 11 2
705 269.68 radiation 1 1440 < th dose independent rect. 10 8
709 269.70 humidity 60 43200 < th dose dependent rect. 10 4
751 269.87 radiation 40 43200 < th dose independent rect. 10 3
756 269.92 radiation 40 43200 < th dose independent sin 21 NA
758 269.92 radiation 40 43200 < th dose independent rect. 12 23
774 269.94 humidity 60 43200 < th dose independent rect. 4 8
781 269.97 radiation 40 43200 < th dose independent rect. 15 23
784 270.01 radiation 10 43200 < th dose independent sin 17 NA
802 270.12 radiation 40 43200 < th dose independent rect. 3 14
818 270.13 radiation 40 43200 < th dose independent no NA NA
820 270.13 radiation 40 43200 < th dose independent rect. 5 11
933 270.22 radiation 10 43200 < th dose independent rect. 11 8
958 270.39 wind 5 43200 > th dose independent rect. 17 1
991 270.43 temperature 25 1440 > th dose independent rect. 11 14