Os07g0605200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MADS box transcription factor 18 (OsMADS18) (MADS box protein 2) (MADS box protein 28) (FDRMADS7).
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Os07g0605200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MADS box transcription factor 18 (OsMADS18) (MADS box protein 2) (MADS box protein 28) (FDRMADS7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.66 | 0.437 | 13.9 | 1.38 | 1.36 | 2.15 | 0.268 | -4.12 | 0.639 | 5.48 | 26.4 | 5234 | -- | -- |
| 96.81 | 0.458 | 13.8 | 2.42 | 1.4 | 1.77 | 0.484 | -- | 0.706 | 5.37 | 26.2 | 6519 | -- | -- |
| 86.5 | 0.433 | 13.9 | 1.4 | 1.35 | 2.14 | -- | -4.1 | 0.646 | 5.48 | 26.5 | 5281 | -- | -- |
| 95.86 | 0.456 | 13.8 | 2.5 | 1.35 | 1.75 | -- | -- | 0.761 | 5.38 | 26.31 | 6521 | -- | -- |
| 171.39 | 0.61 | 13.9 | 1.45 | -- | 2.13 | -- | -3.8 | 0.668 | -- | 26.84 | 5552 | -- | -- |
| 194.28 | 0.653 | 13.7 | 3.24 | 1.33 | -- | 0.461 | -- | 1.26 | 4.94 | -- | -- | -- | -- |
| 194.82 | 0.654 | 13.7 | 3.24 | 1.33 | -- | -- | -- | 1.25 | 4.96 | -- | -- | -- | -- |
| 179.99 | 0.625 | 13.8 | 2.48 | -- | 1.92 | -- | -- | 0.864 | -- | 26.3 | 5560 | -- | -- |
| 74.3 | 0.401 | 14 | -- | 1.27 | 3.1 | -- | -- | 0.0305 | 5.14 | 19.61 | 33262 | -- | -- |
| 288.38 | 0.794 | 13.7 | 3.29 | -- | -- | -- | -- | 1.29 | -- | -- | -- | -- | -- |
| 471.31 | 1.02 | 13.8 | -- | 1.39 | -- | -- | -- | 0.893 | 4.89 | -- | -- | -- | -- |
| 162.65 | 0.594 | 14 | -- | -- | 3.11 | -- | -- | 0.0733 | -- | 19.6 | 32957 | -- | -- |
| 573.49 | 1.12 | 13.8 | -- | -- | -- | -- | -- | 0.923 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 5 | 75.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 6 | 75.78 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 10 | 75.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 13 | 76.05 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 24 | 76.19 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 28 | 76.25 | radiation | 1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 33 | 76.29 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 45 | 76.36 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 47 | 76.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 49 | 76.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 55 | 76.40 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 86 | 76.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 22 |
| 112 | 76.51 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 132 | 76.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 158 | 76.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 191 | 76.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 217 | 76.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 218 | 76.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 15 |
| 253 | 76.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 254 | 76.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 255 | 76.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 19 |
| 291 | 76.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 295 | 76.82 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 314 | 76.85 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 322 | 76.88 | temperature | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 347 | 76.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 383 | 76.99 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 390 | 77.00 | temperature | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 657 | 77.65 | temperature | 15 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 677 | 77.73 | temperature | 15 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 690 | 77.76 | temperature | 15 | 43200 | > th | dose dependent | rect. | 2 | 3 |
| 867 | 78.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 894 | 78.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 896 | 78.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 901 | 78.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 911 | 78.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 976 | 78.51 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 985 | 78.53 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |