Os07g0604500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitochondrial import inner membrane translocase subunit Tim17.
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Os07g0604500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitochondrial import inner membrane translocase subunit Tim17.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.9 | 0.261 | 12.4 | 0.0682 | 1.62 | -0.319 | 0.349 | 1.08 | -0.097 | 14.9 | 10 | 1311 | -- | -- |
| 32.65 | 0.266 | 12.4 | -0.0667 | 1.6 | -0.311 | 0.204 | -- | -0.15 | 14.9 | 10.3 | 1311 | -- | -- |
| 31.3 | 0.261 | 12.4 | 0.0535 | 1.62 | -0.326 | -- | 1.01 | -0.103 | 14.9 | 10 | 1308 | -- | -- |
| 32.73 | 0.266 | 12.4 | -0.084 | 1.61 | -0.292 | -- | -- | -0.15 | 14.9 | 10.3 | 1317 | -- | -- |
| 113.23 | 0.498 | 12.4 | -0.305 | -- | 0.892 | -- | 0.0664 | -0.253 | -- | 10 | 1308 | -- | -- |
| 34.79 | 0.277 | 12.4 | -0.177 | 1.65 | -- | 0.236 | -- | -0.24 | 14.8 | -- | -- | -- | -- |
| 34.98 | 0.277 | 12.4 | -0.171 | 1.65 | -- | -- | -- | -0.238 | 14.8 | -- | -- | -- | -- |
| 113.26 | 0.498 | 12.4 | -0.302 | -- | 0.893 | -- | -- | -0.253 | -- | 10 | 1308 | -- | -- |
| 32.92 | 0.267 | 12.4 | -- | 1.61 | -0.299 | -- | -- | -0.145 | 14.9 | 10.3 | 1317 | -- | -- |
| 193.01 | 0.649 | 12.4 | -0.242 | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
| 35.76 | 0.28 | 12.4 | -- | 1.65 | -- | -- | -- | -0.219 | 14.8 | -- | -- | -- | -- |
| 115.67 | 0.503 | 12.4 | -- | -- | 0.888 | -- | -- | -0.219 | -- | 10 | 1308 | -- | -- |
| 194.55 | 0.651 | 12.4 | -- | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.92 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 9 | 26.30 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 12 | 26.41 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 13 | 26.44 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 16 | 26.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 27 | 26.79 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 4 |
| 29 | 26.79 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 30 | 26.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 4 |
| 34 | 26.86 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 37 | 26.87 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 40 | 26.91 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 45 | 26.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 47 | 26.93 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 48 | 26.93 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 50 | 26.93 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 51 | 26.93 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 53 | 26.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 55 | 26.95 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 20 |
| 56 | 26.95 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 57 | 26.95 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 58 | 26.95 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 63 | 26.98 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 81 | 27.09 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 82 | 27.11 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 84 | 27.12 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 3 |
| 103 | 27.25 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 4 | 3 |
| 133 | 27.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 142 | 27.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 156 | 27.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 158 | 27.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 159 | 27.47 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 164 | 27.49 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 167 | 27.51 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 179 | 27.56 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 3 |
| 180 | 27.56 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 3 |
| 181 | 27.56 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 191 | 27.59 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 3 |
| 193 | 27.59 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 3 |
| 194 | 27.59 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 3 |
| 197 | 27.59 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 3 |
| 198 | 27.59 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 3 |
| 206 | 27.59 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 21 |
| 209 | 27.63 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 216 | 27.68 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 3 |
| 221 | 27.70 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 225 | 27.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 21 |
| 226 | 27.74 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 252 | 27.76 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 253 | 27.76 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 21 |
| 257 | 27.76 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 258 | 27.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 260 | 27.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 268 | 27.78 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 340 | 27.93 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 366 | 27.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 367 | 27.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 377 | 27.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 379 | 27.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 380 | 27.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 383 | 27.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 384 | 27.98 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 392 | 27.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 393 | 27.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 470 | 28.03 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 471 | 28.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 474 | 28.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 493 | 28.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 494 | 28.09 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 509 | 28.12 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 538 | 28.14 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 573 | 28.21 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 575 | 28.22 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 21 |
| 589 | 28.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 629 | 28.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 661 | 28.35 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 681 | 28.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 13 |
| 688 | 28.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 704 | 28.42 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 727 | 28.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 11 |
| 737 | 28.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 11 |
| 738 | 28.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 740 | 28.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 767 | 28.53 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 768 | 28.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 771 | 28.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 775 | 28.53 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 780 | 28.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 785 | 28.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 795 | 28.54 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 798 | 28.54 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 855 | 28.61 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 896 | 28.65 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 900 | 28.66 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 21 |
| 934 | 28.69 | humidity | 50.0 | 10 | > th | dose independent | rect. | 7 | 21 |