Os07g0603900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0603900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein prenyltransferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.16 | 0.37 | 9.61 | 1.96 | 1.8 | 0.617 | 0.0765 | -1.62 | 0.282 | 17.9 | 80.01 | 1700 | -- | -- |
| 64.29 | 0.373 | 9.62 | 1.85 | 1.78 | 0.484 | 0.252 | -- | 0.255 | 17.9 | 79.19 | 1711 | -- | -- |
| 62.17 | 0.367 | 9.61 | 1.96 | 1.8 | 0.62 | -- | -1.64 | 0.282 | 17.9 | 80.02 | 1701 | -- | -- |
| 64.06 | 0.373 | 9.61 | 1.84 | 1.69 | 0.454 | -- | -- | 0.265 | 18.1 | 78 | 1262 | -- | -- |
| 193.68 | 0.652 | 9.59 | 1.78 | -- | -0.459 | -- | -0.263 | 0.198 | -- | 80.02 | 1701 | -- | -- |
| 66.92 | 0.384 | 9.62 | 1.84 | 1.71 | -- | 0.333 | -- | 0.231 | 18 | -- | -- | -- | -- |
| 67.19 | 0.384 | 9.62 | 1.84 | 1.71 | -- | -- | -- | 0.232 | 18 | -- | -- | -- | -- |
| 190.67 | 0.646 | 9.6 | 1.77 | -- | -0.493 | -- | -- | 0.185 | -- | 80 | 1990 | -- | -- |
| 146.81 | 0.564 | 9.65 | -- | 1.76 | 0.778 | -- | -- | 0.13 | 18 | 87.7 | 1679 | -- | -- |
| 218.19 | 0.69 | 9.59 | 1.79 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 156.27 | 0.585 | 9.67 | -- | 1.68 | -- | -- | -- | 0.0275 | 18.1 | -- | -- | -- | -- |
| 271.76 | 0.768 | 9.62 | -- | -- | -1.07 | -- | -- | -0.0389 | -- | 70 | 2025 | -- | -- |
| 302.57 | 0.812 | 9.64 | -- | -- | -- | -- | -- | -0.00502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 59.49 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 8 | 59.73 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 10 | 59.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 13 | 59.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 22 | 60.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 25 | 60.10 | humidity | 90 | 720 | > th | dose independent | rect. | 23 | 1 |
| 29 | 60.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 31 | 60.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 32 | 60.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 45 | 60.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 22 | 5 |
| 60 | 60.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 108 | 60.79 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 124 | 60.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 127 | 60.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 146 | 61.00 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 151 | 61.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 213 | 61.27 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 23 | 5 |
| 220 | 61.28 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 222 | 61.29 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 271 | 61.42 | humidity | 80 | 90 | > th | dose dependent | rect. | 22 | 5 |
| 307 | 61.52 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 23 | 1 |
| 308 | 61.52 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 12 |
| 425 | 61.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 434 | 61.78 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 17 | 15 |
| 445 | 61.80 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 446 | 61.80 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 464 | 61.82 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 23 | 5 |
| 472 | 61.83 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 512 | 61.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 515 | 61.90 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 522 | 61.90 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 525 | 61.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 611 | 62.00 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 621 | 62.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 622 | 62.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 633 | 62.02 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 10 |
| 643 | 62.03 | temperature | 15 | 90 | > th | dose independent | rect. | 17 | 15 |
| 656 | 62.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 686 | 62.07 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 20 |
| 712 | 62.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 727 | 62.11 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 9 |
| 729 | 62.11 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 738 | 62.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 751 | 62.12 | temperature | 10 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 757 | 62.13 | humidity | 60 | 10 | > th | dose independent | rect. | 4 | 19 |
| 758 | 62.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 792 | 62.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 14 |
| 799 | 62.16 | humidity | 90 | 90 | > th | dose independent | rect. | 22 | 5 |
| 873 | 62.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 879 | 62.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 888 | 62.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 897 | 62.22 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 912 | 62.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 932 | 62.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 11 |
| 971 | 62.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 14 |