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Os07g0603800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.51 (0.0344) R2 : 0.782
β1 : -3.6 (0.132) R2dD : 0.407 R2D : 0.493
β2 : 1.62 (0.0884) R2dC : 0.167 R2C : 0.149
β3 : 2.06 (0.149) R2dE : 0.106 R2E : 0.229
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.383 (0.0748) R2dN8 : 0.0175 R2N8 : -0.0058
σ : 0.639
deviance : 188.27
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C
peak time of C : 7.14
E
wheather : wind
threshold : 5.397
memory length : 4731
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 0.233

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.57 0.637 7.55 -3.54 1.58 2.15 -1.43 1.43 -0.38 6.82 5.156 4307 18.1 0.218
185.59 0.634 7.54 -3.53 1.6 1.86 -1.31 -- -0.35 6.91 5.315 4426 18.1 0.217
188.54 0.64 7.55 -3.53 1.6 2.19 -- 1.54 -0.387 6.92 5.181 4306 18.1 0.233
188.27 0.639 7.51 -3.6 1.62 2.06 -- -- -0.383 7.14 5.397 4731 18.1 0.233
311.28 0.822 7.55 -3.48 -- 2.3 -- 1.37 -0.286 -- 5.324 4071 18.1 0.233
259.92 0.756 7.58 -4.16 1.63 -- -1.74 -- -0.632 6.72 -- -- -- --
267.29 0.766 7.58 -4.19 1.63 -- -- -- -0.625 6.89 -- -- -- --
312.8 0.824 7.52 -3.57 -- 2.09 -- -- -0.179 -- 5.245 5326 18.2 0.179
339.96 0.859 7.52 -- 1.66 2.78 -- -- -0.2 7.07 5.32 32983 18 0.348
405.73 0.941 7.61 -4.15 -- -- -- -- -0.594 -- -- -- -- --
729.02 1.26 7.47 -- 1.58 -- -- -- -0.159 7.05 -- -- -- --
396.89 0.928 7.52 -- -- 4.39 -- -- -0.209 -- 5.34 32866 17.9 0.355
860.22 1.37 7.51 -- -- -- -- -- -0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.27 wind 9.0 14400 < th dose independent rect. 23 14
4 169.74 wind 9.0 14400 < th dose independent rect. 5 7
6 170.74 wind 9.0 14400 < th dose independent rect. 4 9
8 170.82 wind 9.0 14400 > th dose independent rect. 6 5
11 171.27 wind 9.0 14400 > th dose independent rect. 5 7
13 172.21 wind 7.0 14400 > th dose dependent rect. 3 10
14 172.29 wind 7.0 14400 > th dose dependent rect. 24 13
18 172.31 wind 7.0 14400 > th dose dependent rect. 22 15
31 175.07 wind 9.0 14400 > th dose independent rect. 22 15
32 175.22 wind 9.0 14400 < th dose independent rect. 9 3
44 176.38 wind 9.0 14400 > th dose independent rect. 9 3
69 177.96 wind 9.0 14400 > th dose dependent rect. 10 2
117 183.27 wind 3.0 14400 > th dose independent rect. 2 2
127 184.26 wind 3.0 14400 < th dose independent rect. 2 2
136 184.94 wind 1.0 14400 > th dose dependent rect. 1 3
149 185.95 wind 9.0 14400 < th dose independent sin 6 NA
153 186.82 wind 9.0 14400 < th dose dependent rect. 1 3
166 187.64 wind 9.0 14400 < th dose dependent rect. 3 1
168 187.69 wind 3.0 43200 < th dose independent rect. 23 5
198 189.08 humidity 80.0 43200 < th dose dependent rect. 4 3
199 189.14 wind 7.0 14400 > th dose dependent sin 6 NA
201 189.18 wind 3.0 43200 < th dose independent rect. 22 9
217 189.86 wind 3.0 14400 > th dose dependent rect. 1 11
347 193.41 wind 9.0 14400 > th dose independent sin 7 NA
367 194.00 wind 3.0 43200 < th dose independent rect. 6 1
370 194.04 wind 3.0 43200 > th dose independent rect. 6 1
448 195.45 wind 5.0 43200 < th dose dependent rect. 22 9
463 195.74 precipitation 0.1 14400 > th dose independent rect. 14 2
464 195.74 precipitation 0.1 14400 > th dose dependent rect. 14 2
475 195.88 wind 3.0 14400 > th dose dependent sin 7 NA
482 195.97 humidity 90.0 14400 > th dose dependent rect. 15 1
491 196.19 humidity 90.0 14400 > th dose dependent rect. 12 5
494 196.22 precipitation 0.1 14400 > th dose independent rect. 5 11
506 196.39 precipitation 0.1 14400 < th dose independent rect. 14 2
508 196.39 precipitation 0.1 14400 < th dose dependent rect. 14 2
512 196.43 precipitation 0.1 14400 > th dose dependent rect. 5 5
515 196.55 precipitation 0.1 14400 > th dose independent rect. 7 9
524 196.65 precipitation 0.1 14400 < th dose independent rect. 5 5
525 196.65 precipitation 0.1 14400 < th dose dependent rect. 5 5
526 196.66 wind 7.0 4320 < th dose independent rect. 18 1
531 196.72 precipitation 0.1 14400 > th dose independent rect. 5 5
541 196.89 humidity 90.0 14400 > th dose dependent rect. 3 19
545 196.97 precipitation 0.1 14400 < th dose independent rect. 5 11
546 196.97 precipitation 0.1 14400 < th dose dependent rect. 5 11
554 197.09 humidity 90.0 14400 > th dose dependent rect. 8 12
555 197.10 humidity 90.0 14400 > th dose dependent rect. 9 8
562 197.19 wind 3.0 43200 < th dose independent sin 8 NA
569 197.26 humidity 90.0 14400 > th dose dependent rect. 7 14
582 197.37 precipitation 0.1 14400 > th dose independent rect. 9 7
612 197.67 wind 5.0 4320 > th dose dependent rect. 18 1
620 197.74 precipitation 0.1 14400 > th dose dependent rect. 5 11
630 197.83 temperature 20.0 14400 < th dose independent rect. 12 9
635 197.86 precipitation 0.1 14400 < th dose independent rect. 7 9
637 197.86 precipitation 0.1 14400 < th dose dependent rect. 7 9
643 197.93 wind 3.0 43200 > th dose independent sin 8 NA
656 198.07 temperature 20.0 14400 > th dose independent rect. 18 1
657 198.08 temperature 20.0 14400 < th dose independent rect. 18 2
664 198.13 precipitation 0.1 14400 > th dose independent rect. 17 1
681 198.29 humidity 80.0 14400 > th dose independent rect. 13 1
692 198.38 wind 1.0 43200 > th dose dependent rect. 6 1
696 198.40 humidity 90.0 14400 > th dose dependent sin 23 NA
732 198.73 wind 1.0 43200 < th dose dependent rect. 18 12
753 198.89 humidity 90.0 14400 > th dose dependent rect. 9 1
755 198.91 humidity 90.0 14400 > th dose independent rect. 20 1
757 198.92 precipitation 0.1 14400 > th dose independent rect. 19 1
777 199.09 humidity 90.0 14400 > th dose dependent rect. 19 1
780 199.11 precipitation 0.1 14400 < th dose independent rect. 19 1
783 199.11 precipitation 0.1 14400 < th dose dependent rect. 19 1
793 199.18 precipitation 0.1 14400 < th dose independent rect. 9 7
794 199.18 precipitation 0.1 14400 < th dose dependent rect. 9 7
804 199.21 wind 9.0 14400 < th dose dependent rect. 1 12
812 199.26 precipitation 0.1 14400 < th dose independent rect. 17 1
814 199.26 precipitation 0.1 14400 < th dose dependent rect. 17 1
852 199.59 wind 9.0 4320 > th dose independent rect. 17 4
856 199.65 wind 9.0 4320 < th dose independent rect. 17 4
885 199.77 humidity 90.0 14400 > th dose dependent rect. 7 21
956 200.16 wind 5.0 43200 < th dose dependent rect. 6 1
960 200.20 wind 9.0 43200 < th dose dependent rect. 6 1
973 200.29 humidity 80.0 14400 > th dose independent rect. 10 1