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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0603700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P-450.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0423) R2 : 0.00186
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0821 (0.089) R2dN8 : 0.00241 R2N8 : 0.00186
σ : 0.796
deviance : 290.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
275.91 0.78 3.07 0.358 0.157 -0.132 -0.477 -2.65 0.0938 4.58 19.7 6650 -- --
276.91 0.775 3.2 0.171 0.136 0.757 -0.661 -- -0.0187 5.23 14.1 13398 -- --
276.5 0.774 3.07 0.362 0.155 -0.141 -- -2.67 0.0957 4.78 19.75 6648 -- --
277.09 0.775 3.18 0.209 0.157 0.804 -- -- 0.00201 4.9 14.04 13396 -- --
277.76 0.776 3.07 0.368 -- -0.148 -- -2.68 0.0994 -- 19.73 6637 -- --
287.31 0.795 3.21 -0.249 0.155 -- -0.457 -- -0.115 4.8 -- -- -- --
287.85 0.795 3.21 -0.247 0.152 -- -- -- -0.113 4.85 -- -- -- --
278.26 0.777 3.18 0.232 -- 0.822 -- -- 0.0169 -- 14.2 13398 -- --
277.99 0.777 3.18 -- 0.147 0.695 -- -- -0.0194 5.15 14.2 13407 -- --
289.07 0.794 3.21 -0.242 -- -- -- -- -0.109 -- -- -- -- --
289.47 0.796 3.2 -- 0.148 -- -- -- -0.0853 4.9 -- -- -- --
279.19 0.778 3.19 -- -- 0.671 -- -- -0.0231 -- 14.2 13398 -- --
290.61 0.796 3.2 -- -- -- -- -- -0.0821 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.47 temperature 20 270 < th dose dependent rect. 24 8
4 264.91 radiation 40 90 > th dose independent rect. 15 1
21 264.91 radiation 40 90 > th dose dependent rect. 15 1
38 265.30 temperature 20 90 < th dose independent rect. 2 9
39 265.60 temperature 25 90 < th dose dependent rect. 2 9
42 266.96 temperature 20 270 < th dose independent rect. 24 10
46 267.22 temperature 30 90 > th dose dependent rect. 10 1
52 267.40 atmosphere 1000 10 < th dose dependent rect. 10 2
55 267.42 temperature 30 270 < th dose dependent rect. 24 10
59 267.64 temperature 20 90 < th dose dependent rect. 2 1
61 267.90 atmosphere 1000 90 < th dose dependent rect. 10 1
67 268.31 atmosphere 1000 10 < th dose dependent rect. 12 1
77 268.50 atmosphere 1000 10 < th dose independent rect. 10 2
84 268.69 wind 1 10 < th dose independent rect. 12 1
86 268.69 wind 1 10 < th dose dependent rect. 12 1
88 268.70 atmosphere 1000 90 < th dose independent rect. 10 1
95 269.02 temperature 20 90 < th dose independent rect. 2 12
127 269.61 temperature 30 90 > th dose independent rect. 10 1
148 270.18 temperature 30 30 < th dose dependent rect. 3 18
161 270.42 humidity 80 30 < th dose dependent rect. 18 2
169 270.56 humidity 90 10 < th dose dependent rect. 20 1
170 270.60 temperature 20 90 < th dose independent rect. 2 1
195 270.88 temperature 30 90 < th dose dependent rect. 2 13
347 272.51 temperature 20 30 < th dose dependent rect. 3 5
352 272.56 wind 1 43200 < th dose dependent rect. 6 21
357 272.60 wind 9 14400 < th dose independent rect. 23 1
382 272.79 wind 1 270 > th dose independent rect. 23 22
385 272.82 temperature 20 270 > th dose independent sin 6 NA
387 272.83 humidity 80 30 < th dose dependent rect. 18 10
404 272.96 wind 1 270 < th dose independent rect. 13 6
420 273.08 wind 1 43200 > th dose independent rect. 5 21
427 273.14 wind 3 43200 > th dose independent rect. 19 1
439 273.20 wind 1 43200 < th dose independent rect. 7 21
442 273.21 temperature 20 270 < th dose independent sin 6 NA
443 273.21 wind 1 43200 < th dose independent rect. 5 21
450 273.25 wind 1 43200 < th dose dependent rect. 7 5
476 273.38 atmosphere 1000 10 < th dose dependent rect. 8 5
483 273.42 wind 3 43200 < th dose independent rect. 19 1
571 273.80 wind 3 43200 < th dose dependent rect. 16 8
573 273.81 wind 1 43200 < th dose dependent rect. 9 3
590 273.91 temperature 20 270 > th dose independent rect. 23 12
616 273.98 wind 1 43200 < th dose independent rect. 7 5
621 274.01 temperature 30 90 > th dose dependent sin 9 NA
622 274.01 temperature 15 270 > th dose dependent sin 6 NA
649 274.12 humidity 90 30 < th dose independent rect. 18 3
656 274.14 wind 1 43200 > th dose independent rect. 7 5
706 274.26 humidity 80 43200 > th dose independent rect. 15 15
708 274.27 temperature 30 270 < th dose dependent sin 6 NA
752 274.40 wind 3 43200 < th dose dependent sin 16 NA
754 274.41 humidity 90 43200 < th dose dependent rect. 21 1
757 274.42 humidity 90 43200 < th dose dependent rect. 20 6
760 274.43 humidity 80 43200 > th dose independent sin 14 NA
787 274.44 wind 3 43200 < th dose dependent rect. 9 15
790 274.45 humidity 80 43200 < th dose independent rect. 15 14
800 274.46 humidity 80 43200 > th dose independent rect. 17 10
866 274.53 wind 9 14400 < th dose independent rect. 24 3
901 274.58 humidity 80 43200 < th dose independent sin 14 NA
932 274.62 humidity 60 43200 > th dose dependent rect. 21 1
958 274.67 humidity 60 43200 > th dose dependent rect. 20 3
973 274.69 wind 3 43200 < th dose independent rect. 18 3
976 274.69 wind 1 270 < th dose dependent rect. 12 7