Os07g0603600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 246 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os07g0603600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 246 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.93 | 0.54 | 8.92 | 0.42 | 1.67 | 1.39 | 0.554 | 0.43 | 0.261 | 16.9 | 62.93 | 7 | -- | -- |
| 132.39 | 0.536 | 8.92 | 0.435 | 1.67 | 1.41 | 0.303 | -- | 0.263 | 16.8 | 63 | 5 | -- | -- |
| 132.47 | 0.536 | 8.92 | 0.428 | 1.68 | 1.42 | -- | 0.206 | 0.265 | 16.8 | 63.05 | 5 | -- | -- |
| 132.56 | 0.536 | 8.92 | 0.448 | 1.67 | 1.43 | -- | -- | 0.272 | 16.8 | 63.04 | 4 | -- | -- |
| 222.36 | 0.695 | 8.92 | 0.413 | -- | 0.551 | -- | 0.19 | 0.154 | -- | 41.29 | 2 | -- | -- |
| 169.25 | 0.61 | 8.95 | 0.475 | 1.01 | -- | 1.51 | -- | 0.169 | 19.7 | -- | -- | -- | -- |
| 175.09 | 0.62 | 8.94 | 0.442 | 1.03 | -- | -- | -- | 0.174 | 19.3 | -- | -- | -- | -- |
| 222.34 | 0.698 | 8.92 | 0.417 | -- | 0.581 | -- | -- | 0.161 | -- | 36.69 | 2 | -- | -- |
| 137.62 | 0.546 | 8.93 | -- | 1.68 | 1.43 | -- | -- | 0.218 | 16.8 | 63.07 | 5 | -- | -- |
| 230.92 | 0.71 | 8.92 | 0.424 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 180.24 | 0.628 | 8.96 | -- | 1.02 | -- | -- | -- | 0.125 | 19.3 | -- | -- | -- | -- |
| 226.92 | 0.704 | 8.93 | -- | -- | 0.586 | -- | -- | 0.115 | -- | 36.69 | 2 | -- | -- |
| 235.66 | 0.717 | 8.93 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.80 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 2 | 129.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 17 |
| 5 | 130.05 | humidity | 60 | 10 | > th | dose dependent | sin | 0 | NA |
| 8 | 130.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 12 | 130.65 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 24 | 131.42 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 29 | 131.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 36 | 131.84 | humidity | 50 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 39 | 132.03 | humidity | 50 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 42 | 132.10 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 63 | 132.76 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 81 | 133.19 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 119 | 134.23 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 7 |
| 130 | 134.40 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 137 | 134.50 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 144 | 134.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 147 | 134.87 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 162 | 135.11 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 178 | 135.30 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 199 | 135.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 204 | 135.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 220 | 135.92 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 224 | 135.95 | humidity | 50 | 720 | > th | dose dependent | sin | 23 | NA |
| 230 | 136.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 231 | 136.04 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 235 | 136.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 249 | 136.18 | humidity | 60 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 259 | 136.30 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 270 | 136.38 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 8 |
| 279 | 136.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 284 | 136.51 | humidity | 50 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 299 | 136.62 | humidity | 70 | 30 | > th | dose independent | rect. | 1 | 17 |
| 300 | 136.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 306 | 136.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 323 | 136.78 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 334 | 136.84 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 19 |
| 339 | 136.89 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 344 | 136.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 394 | 137.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 408 | 137.38 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 21 |
| 422 | 137.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 423 | 137.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 456 | 137.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 483 | 137.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 487 | 137.82 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 494 | 137.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 496 | 137.91 | humidity | 90 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 499 | 137.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 508 | 137.96 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 7 |
| 606 | 138.30 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 608 | 138.30 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 644 | 138.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 654 | 138.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 692 | 138.54 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 706 | 138.58 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 20 |
| 788 | 138.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 817 | 138.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 847 | 138.91 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 872 | 138.98 | humidity | 90 | 720 | < th | dose dependent | sin | 21 | NA |
| 881 | 139.01 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 910 | 139.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 970 | 139.19 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 978 | 139.21 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 991 | 139.24 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |