Os07g0603500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0603500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Peptidase A1, pepsin family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.94 | 0.504 | 10.2 | -0.288 | 1.59 | 0.916 | -0.526 | 2.82 | -1.53 | 19.9 | 43.77 | 678 | -- | -- |
| 124.21 | 0.519 | 10.2 | -0.464 | 1.63 | 0.933 | -0.57 | -- | -1.57 | 20 | 40 | 629 | -- | -- |
| 115.63 | 0.501 | 10.2 | -0.279 | 1.6 | 0.883 | -- | 2.72 | -1.53 | 19.8 | 44.37 | 676 | -- | -- |
| 123.08 | 0.517 | 10.2 | -0.439 | 1.6 | 0.997 | -- | -- | -1.59 | 20 | 40 | 629 | -- | -- |
| 209.54 | 0.674 | 10.2 | -0.493 | -- | 1.85 | -- | 1.59 | -1.75 | -- | 36.48 | 715 | -- | -- |
| 146.03 | 0.567 | 10.2 | -0.401 | 2.08 | -- | 0.437 | -- | -1.49 | 19.4 | -- | -- | -- | -- |
| 146.55 | 0.567 | 10.2 | -0.411 | 2.08 | -- | -- | -- | -1.49 | 19.4 | -- | -- | -- | -- |
| 186.49 | 0.636 | 10.2 | -0.512 | -- | 2.48 | -- | -- | -1.71 | -- | -0.03472 | 766 | -- | -- |
| 128.56 | 0.528 | 10.2 | -- | 1.6 | 1.02 | -- | -- | -1.54 | 20 | 40.32 | 629 | -- | -- |
| 376.73 | 0.907 | 10.2 | -0.445 | -- | -- | -- | -- | -1.52 | -- | -- | -- | -- | -- |
| 151 | 0.575 | 10.2 | -- | 2.08 | -- | -- | -- | -1.44 | 19.4 | -- | -- | -- | -- |
| 192.37 | 0.646 | 10.2 | -- | -- | 2.28 | -- | -- | -1.68 | -- | -2.008 | 773 | -- | -- |
| 381.96 | 0.912 | 10.2 | -- | -- | -- | -- | -- | -1.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 4 | 114.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 7 | 114.91 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 15 |
| 17 | 115.76 | radiation | 40 | 720 | > th | dose dependent | sin | 9 | NA |
| 20 | 115.83 | radiation | 40 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 30 | 116.15 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 13 |
| 34 | 116.36 | radiation | 40 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 36 | 116.42 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 55 | 116.46 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 6 |
| 80 | 116.65 | radiation | 40 | 720 | > th | dose dependent | no | NA | NA |
| 262 | 116.86 | temperature | 25 | 270 | > th | dose dependent | sin | 17 | NA |
| 266 | 116.88 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 18 |
| 271 | 117.03 | radiation | 40 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 294 | 117.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 325 | 117.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 332 | 117.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 333 | 117.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 9 |
| 334 | 117.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 14 |
| 352 | 117.64 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 356 | 117.66 | temperature | 10 | 270 | > th | dose dependent | sin | 18 | NA |
| 375 | 117.80 | temperature | 25 | 720 | > th | dose dependent | sin | 3 | NA |
| 386 | 117.88 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 9 |
| 437 | 118.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 441 | 118.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 451 | 118.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 468 | 118.36 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 493 | 118.48 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 502 | 118.53 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 22 |
| 509 | 118.57 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 15 | 4 |
| 632 | 119.05 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 7 |
| 651 | 119.14 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 742 | 119.48 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 754 | 119.54 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 771 | 119.55 | radiation | 40 | 720 | > th | dose independent | rect. | 14 | 21 |
| 938 | 119.67 | radiation | 40 | 270 | < th | dose independent | rect. | 19 | 20 |