Os07g0602700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0602700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.45 | 0.34 | 8.39 | 1.26 | 0.324 | 0.814 | 0.271 | 0.619 | 0.000137 | 22.4 | 9.996 | 4416 | -- | -- |
| 52.84 | 0.339 | 8.41 | 1.16 | 0.281 | 0.811 | 0.348 | -- | -0.0321 | 22.3 | 12.4 | 3760 | -- | -- |
| 52.69 | 0.338 | 8.39 | 1.27 | 0.285 | 0.828 | -- | 0.682 | -0.00246 | 22.1 | 9.623 | 3837 | -- | -- |
| 53.06 | 0.339 | 8.42 | 1.12 | 0.282 | 0.8 | -- | -- | -0.0368 | 22.2 | 9.83 | 3826 | -- | -- |
| 55.49 | 0.347 | 8.38 | 1.41 | -- | 0.961 | -- | 1.01 | 0.0139 | -- | 9.606 | 855 | -- | -- |
| 63.85 | 0.375 | 8.38 | 1.48 | 0.339 | -- | 0.29 | -- | 0.116 | 22.7 | -- | -- | -- | -- |
| 64.2 | 0.375 | 8.38 | 1.47 | 0.338 | -- | -- | -- | 0.115 | 22.7 | -- | -- | -- | -- |
| 56.17 | 0.349 | 8.41 | 1.23 | -- | 0.826 | -- | -- | -0.0463 | -- | 18.39 | 863 | -- | -- |
| 59.89 | 0.36 | 8.5 | -- | 0.316 | 1.26 | -- | -- | -0.425 | 22.5 | 7.713 | 47520 | -- | -- |
| 71.24 | 0.394 | 8.37 | 1.48 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 121.27 | 0.515 | 8.42 | -- | 0.349 | -- | -- | -- | -0.0486 | 23 | -- | -- | -- | -- |
| 65.88 | 0.378 | 8.5 | -- | -- | 1.28 | -- | -- | -0.431 | -- | -0.2863 | 47057 | -- | -- |
| 128.86 | 0.53 | 8.41 | -- | -- | -- | -- | -- | -0.0469 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 3 | 50.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 6 | 50.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 13 | 50.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 16 | 50.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 44 | 50.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 67 | 50.94 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 71 | 50.97 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 77 | 51.01 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 83 | 51.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 117 | 51.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 121 | 51.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 123 | 51.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 139 | 51.36 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 149 | 51.41 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 157 | 51.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 162 | 51.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 184 | 51.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 238 | 51.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 312 | 51.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 359 | 51.88 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 390 | 51.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 418 | 51.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 471 | 52.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 498 | 52.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 537 | 52.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 556 | 52.11 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 603 | 52.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 647 | 52.21 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 18 |
| 654 | 52.22 | temperature | 10 | 4320 | > th | dose dependent | sin | 16 | NA |
| 706 | 52.26 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 734 | 52.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 803 | 52.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 902 | 52.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 987 | 52.40 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 1 |