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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0602000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NADPH HC toxin reductase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0469) R2 : 0.145
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1 (0.124) R2dE : 0.129 R2E : 0.0713
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.54 (0.101) R2dN8 : 0.0734 R2N8 : 0.0155
σ : 0.875
deviance : 353.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 32.21
memory length : 1096
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.87 0.857 3.48 -1.16 0.582 1.79 0.369 -7.99 0.506 2.99 32.66 1096 -- --
337.47 0.856 3.34 0.0117 0.595 0.877 0.434 -- 0.504 2.9 33.7 2172 -- --
333.3 0.85 3.47 -1.14 0.583 1.78 -- -7.75 0.507 2.93 32.62 1088 -- --
337.95 0.856 3.34 0.0141 0.601 0.876 -- -- 0.504 2.89 33.69 2161 -- --
352.24 0.874 3.47 -1.13 -- 1.85 -- -7.59 0.53 -- 32.45 1100 -- --
372.66 0.905 3.37 0.227 0.694 -- 0.548 -- 0.356 2.58 -- -- -- --
373.72 0.905 3.38 0.213 0.694 -- -- -- 0.353 2.54 -- -- -- --
353.39 0.876 3.33 0.0118 -- 1.02 -- -- 0.546 -- 32.02 1100 -- --
337.95 0.856 3.34 -- 0.601 0.879 -- -- 0.504 2.87 33.7 2161 -- --
402.03 0.937 3.37 0.243 -- -- -- -- 0.37 -- -- -- -- --
374.92 0.906 3.38 -- 0.699 -- -- -- 0.329 2.54 -- -- -- --
353.32 0.875 3.33 -- -- 1 -- -- 0.54 -- 32.21 1096 -- --
403.59 0.938 3.38 -- -- -- -- -- 0.344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 317.72 temperature 25 720 > th dose dependent rect. 19 4
2 317.90 temperature 30 720 > th dose dependent rect. 18 1
16 319.09 temperature 25 720 > th dose dependent rect. 21 2
23 321.58 humidity 50 1440 < th dose independent rect. 16 1
25 321.91 humidity 50 1440 < th dose dependent rect. 16 1
52 325.18 humidity 50 1440 > th dose independent rect. 16 1
53 325.20 radiation 1 720 > th dose independent rect. 18 11
54 325.30 radiation 1 720 > th dose dependent rect. 18 11
57 325.78 radiation 1 720 > th dose independent rect. 18 1
68 325.92 wind 1 30 < th dose independent rect. 4 12
70 325.99 temperature 30 720 > th dose independent rect. 18 1
84 326.24 radiation 1 720 > th dose dependent rect. 18 1
102 326.66 temperature 30 720 < th dose independent rect. 17 9
105 327.27 wind 3 30 < th dose dependent rect. 3 14
109 327.55 humidity 70 720 > th dose independent rect. 19 8
113 327.70 humidity 70 720 < th dose independent rect. 19 1
151 328.89 humidity 70 720 < th dose dependent rect. 19 12
153 328.92 humidity 70 720 < th dose dependent rect. 19 1
175 329.99 wind 3 30 < th dose dependent rect. 3 16
178 330.16 temperature 10 720 > th dose dependent rect. 18 6
244 332.23 radiation 1 720 < th dose independent rect. 17 9
252 332.50 wind 1 30 < th dose independent sin 3 NA
253 332.51 radiation 30 1440 < th dose dependent rect. 18 10
276 333.00 radiation 30 4320 > th dose independent rect. 16 16
277 333.00 wind 3 30 < th dose dependent rect. 3 7
278 333.02 wind 1 90 < th dose dependent rect. 4 1
279 333.05 radiation 30 4320 > th dose independent rect. 7 1
336 333.57 humidity 90 90 > th dose dependent rect. 3 2
339 333.59 radiation 1 1440 > th dose dependent rect. 17 13
348 333.81 wind 1 30 < th dose independent rect. 24 15
363 334.00 temperature 30 1440 < th dose independent rect. 18 6
368 334.06 wind 1 90 < th dose independent rect. 4 1
382 334.41 humidity 50 1440 > th dose independent rect. 17 11
387 334.46 humidity 50 1440 > th dose independent rect. 17 3
396 334.57 humidity 50 1440 > th dose independent rect. 17 6
438 334.77 radiation 20 1440 < th dose dependent rect. 17 13
444 334.87 humidity 50 1440 > th dose independent rect. 17 14
451 334.93 radiation 40 1440 < th dose dependent rect. 17 6
456 334.95 radiation 40 1440 < th dose dependent rect. 17 3
459 334.97 radiation 30 4320 < th dose independent rect. 7 1
460 334.98 temperature 25 1440 > th dose dependent rect. 6 1
476 335.08 radiation 40 1440 > th dose dependent rect. 13 1
499 335.15 humidity 50 1440 > th dose independent rect. 17 16
599 335.32 radiation 30 14400 > th dose dependent rect. 16 1
625 335.38 radiation 1 1440 < th dose independent rect. 18 6
628 335.39 radiation 30 14400 > th dose independent rect. 16 1
629 335.39 temperature 30 1440 < th dose independent rect. 18 2
647 335.41 radiation 1 1440 < th dose independent rect. 18 2
664 335.58 radiation 30 1440 < th dose independent rect. 17 15
677 335.65 radiation 30 4320 < th dose independent rect. 22 10
720 335.77 radiation 20 1440 > th dose dependent rect. 16 16
736 335.87 temperature 30 1440 < th dose independent rect. 18 14
791 336.09 radiation 30 4320 < th dose independent rect. 2 6
800 336.14 radiation 30 4320 < th dose independent rect. 24 8
801 336.14 temperature 30 1440 < th dose independent rect. 18 12
831 336.19 temperature 25 720 > th dose dependent sin 12 NA
889 336.26 radiation 10 1440 > th dose independent rect. 17 13
915 336.39 radiation 10 14400 > th dose independent rect. 5 1
929 336.40 wind 7 43200 > th dose dependent rect. 2 12
937 336.45 wind 7 43200 > th dose dependent rect. 9 5
965 336.57 wind 3 43200 > th dose independent rect. 2 2
968 336.57 wind 9 90 < th dose dependent rect. 3 14
969 336.58 radiation 20 1440 > th dose dependent rect. 7 1
986 336.60 humidity 70 4320 < th dose independent rect. 19 12