Os07g0600200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0600200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.47 | 0.489 | 4.35 | 2.91 | 0.194 | 35 | -0.335 | 73 | 0.039 | 9.77 | 15.09 | 5102 | -- | -- |
| 119.23 | 0.512 | 3.1 | -0.244 | 0.197 | -0.039 | -0.324 | -- | -0.0656 | 9.37 | 14.42 | 1903 | -- | -- |
| 108.89 | 0.486 | 4.35 | 2.9 | 0.195 | 35 | -- | 73.1 | 0.0388 | 9.87 | 15.08 | 5101 | -- | -- |
| 116.86 | 0.503 | 3.09 | -0.163 | 0.251 | 0.362 | -- | -- | -0.0526 | 10.5 | 18.7 | 5300 | -- | -- |
| 111.18 | 0.491 | 4.36 | 2.9 | -- | 35 | -- | 73.1 | 0.0398 | -- | 15.09 | 5101 | -- | -- |
| 119.23 | 0.512 | 3.09 | -0.243 | 0.198 | -- | -0.328 | -- | -0.0652 | 9.38 | -- | -- | -- | -- |
| 119.61 | 0.512 | 3.1 | -0.254 | 0.198 | -- | -- | -- | -0.0652 | 9.64 | -- | -- | -- | -- |
| 117.28 | 0.504 | 3.08 | 0.12 | -- | 0.55 | -- | -- | 0.0713 | -- | 19 | 5365 | -- | -- |
| 115.27 | 0.5 | 3.07 | -- | 0.185 | 0.494 | -- | -- | 0.0499 | 10.2 | 18.9 | 6427 | -- | -- |
| 121.94 | 0.516 | 3.1 | -0.256 | -- | -- | -- | -- | -0.0649 | -- | -- | -- | -- | -- |
| 121.31 | 0.515 | 3.09 | -- | 0.199 | -- | -- | -- | -0.0369 | 9.74 | -- | -- | -- | -- |
| 117.34 | 0.505 | 3.07 | -- | -- | 0.512 | -- | -- | 0.0515 | -- | 18.91 | 6445 | -- | -- |
| 123.67 | 0.519 | 3.09 | -- | -- | -- | -- | -- | -0.0365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 4 | 102.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 13 | 103.42 | temperature | 20 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 29 | 104.53 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 36 | 105.31 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 10 | 1 |
| 37 | 105.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 40 | 105.62 | humidity | 90 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 44 | 105.80 | humidity | 90 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 49 | 106.27 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 51 | 106.35 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 9 | 4 |
| 54 | 106.67 | humidity | 90 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 57 | 106.80 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 58 | 106.85 | humidity | 60 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 71 | 107.21 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 72 | 107.21 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 77 | 107.21 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 107 | 107.21 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 108 | 107.21 | temperature | 15 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 113 | 107.21 | temperature | 10 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 144 | 107.25 | temperature | 15 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 147 | 107.26 | temperature | 10 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 149 | 107.26 | temperature | 10 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 178 | 107.40 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 190 | 107.55 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 201 | 107.55 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 215 | 107.60 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 220 | 107.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 229 | 107.88 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 6 |
| 232 | 107.89 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 253 | 107.89 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 280 | 107.94 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 10 | 5 |
| 283 | 107.96 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 286 | 107.97 | temperature | 15 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 300 | 108.05 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 314 | 108.12 | temperature | 15 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 316 | 108.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 322 | 108.18 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 327 | 108.20 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 328 | 108.20 | temperature | 15 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 333 | 108.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 334 | 108.23 | humidity | 60 | 10 | < th | dose independent | rect. | 14 | 1 |
| 336 | 108.23 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 351 | 108.30 | temperature | 15 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 394 | 108.49 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 415 | 108.58 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 418 | 108.59 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 430 | 108.64 | temperature | 15 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 466 | 108.83 | temperature | 15 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 488 | 108.96 | temperature | 15 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 489 | 108.96 | temperature | 15 | 4320 | < th | dose dependent | rect. | 14 | 11 |
| 492 | 108.97 | temperature | 15 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 504 | 109.03 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 509 | 109.05 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 519 | 109.07 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 531 | 109.11 | temperature | 15 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 688 | 109.62 | temperature | 15 | 4320 | < th | dose independent | sin | 17 | NA |
| 690 | 109.63 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 6 | 3 |
| 696 | 109.66 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 713 | 109.66 | radiation | 40 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 780 | 109.85 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 781 | 109.86 | temperature | 15 | 4320 | > th | dose independent | sin | 17 | NA |
| 827 | 109.98 | temperature | 15 | 4320 | < th | dose dependent | sin | 18 | NA |
| 856 | 110.04 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 870 | 110.08 | temperature | 10 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 886 | 110.12 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 11 | 3 |
| 896 | 110.17 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 9 | 5 |