Os07g0600000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0600000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.37 | 0.371 | 2.92 | -0.0934 | 0.218 | 0.436 | -0.893 | -1.8 | 0.00331 | 17.9 | 5.476 | 717 | -- | -- |
| 62.91 | 0.369 | 2.93 | -0.117 | 0.323 | 0.546 | 0.434 | -- | -0.00836 | 17.8 | 2.155 | 709 | -- | -- |
| 62.64 | 0.369 | 2.92 | -0.0986 | 0.23 | 0.437 | -- | -0.736 | 0.00281 | 18 | 4.992 | 712 | -- | -- |
| 63.38 | 0.371 | 2.93 | -0.113 | 0.317 | 0.526 | -- | -- | -0.00998 | 17.8 | 2.161 | 705 | -- | -- |
| 62.91 | 0.369 | 2.92 | -0.099 | -- | 0.186 | -- | -0.752 | -0.00125 | -- | 5.881 | 715 | -- | -- |
| 63.51 | 0.374 | 2.93 | -0.149 | 0.116 | -- | -0.393 | -- | -0.0349 | 5.03 | -- | -- | -- | -- |
| 63.91 | 0.374 | 2.93 | -0.148 | 0.113 | -- | -- | -- | -0.033 | 5.04 | -- | -- | -- | -- |
| 63.66 | 0.372 | 2.93 | -0.143 | -- | 0.161 | -- | -- | -0.0263 | -- | 5.369 | 693 | -- | -- |
| 63.67 | 0.372 | 2.93 | -- | 0.334 | 0.554 | -- | -- | 0.00152 | 17.8 | 0.8302 | 706 | -- | -- |
| 64.58 | 0.376 | 2.93 | -0.144 | -- | -- | -- | -- | -0.0301 | -- | -- | -- | -- | -- |
| 64.49 | 0.376 | 2.92 | -- | 0.111 | -- | -- | -- | -0.0165 | 5.09 | -- | -- | -- | -- |
| 64.15 | 0.373 | 2.92 | -- | -- | 0.156 | -- | -- | -0.0124 | -- | 0.09995 | 721 | -- | -- |
| 65.13 | 0.377 | 2.92 | -- | -- | -- | -- | -- | -0.0141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.08 | wind | 1.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 3 | 60.08 | wind | 1.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 5 | 60.09 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 6 | 60.09 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 18 | 60.38 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 20 | 60.42 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 37 | 60.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 38 | 60.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 39 | 60.79 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 40 | 60.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 41 | 60.80 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 54 | 60.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 65 | 60.86 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 86 | 60.97 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 89 | 61.01 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 90 | 61.01 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 91 | 61.02 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 97 | 61.05 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 102 | 61.06 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 109 | 61.07 | radiation | 40.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 129 | 61.07 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 146 | 61.08 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 149 | 61.09 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 151 | 61.09 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 152 | 61.09 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 156 | 61.09 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 158 | 61.09 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 163 | 61.09 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 166 | 61.09 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 167 | 61.09 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 172 | 61.09 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 176 | 61.10 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 182 | 61.12 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 219 | 61.24 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 222 | 61.25 | wind | 7.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 223 | 61.25 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 228 | 61.27 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 269 | 61.29 | wind | 7.0 | 10 | > th | dose independent | rect. | 4 | 6 |
| 281 | 61.32 | wind | 7.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 305 | 61.38 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 378 | 61.52 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 438 | 61.58 | radiation | 20.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 612 | 61.73 | wind | 1.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 620 | 61.76 | humidity | 60.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 637 | 61.77 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 638 | 61.77 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 653 | 61.78 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 733 | 61.83 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 739 | 61.84 | wind | 7.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 765 | 61.86 | wind | 7.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 771 | 61.86 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 773 | 61.86 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 782 | 61.87 | wind | 1.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 797 | 61.89 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 806 | 61.90 | temperature | 30.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 812 | 61.90 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 4 |
| 873 | 61.94 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 875 | 61.94 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 939 | 61.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 987 | 61.99 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 3 |