Os07g0599600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0599600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 707.52 | 1.25 | 5.79 | 0.947 | 0.148 | -2.41 | 0.772 | 18.7 | 0.381 | 20 | 0.9999 | 4285 | 6.02 | 1.16 |
| 920.66 | 1.41 | 6.37 | 1.11 | 0.0767 | -2.29 | 0.299 | -- | 0.0974 | 19.4 | 1.3 | 2897 | 5.35 | 0.95 |
| 708.42 | 1.24 | 5.79 | 0.919 | 0.197 | -2.4 | -- | 18.7 | 0.386 | 18.1 | 1 | 4279 | 6.02 | 1.16 |
| 920.36 | 1.41 | 6.38 | 1.12 | 0.0977 | -2.34 | -- | -- | 0.0662 | 19.2 | 1.3 | 2897 | 5.36 | 0.944 |
| 710.47 | 1.24 | 5.79 | 0.926 | -- | -2.4 | -- | 18.7 | 0.386 | -- | 1 | 4279 | 6.03 | 1.15 |
| 1078.18 | 1.54 | 6.26 | 0.58 | 0.254 | -- | -0.154 | -- | 0.606 | 17.3 | -- | -- | -- | -- |
| 1078.23 | 1.54 | 6.26 | 0.58 | 0.254 | -- | -- | -- | 0.605 | 17.5 | -- | -- | -- | -- |
| 920.89 | 1.41 | 6.38 | 1.12 | -- | -2.36 | -- | -- | 0.0609 | -- | 1.3 | 2897 | 5.35 | 0.947 |
| 951.65 | 1.44 | 6.38 | -- | 0.106 | -2.05 | -- | -- | 0.0359 | 19.2 | 1.201 | 2897 | 5.36 | 0.934 |
| 1081.58 | 1.54 | 6.25 | 0.572 | -- | -- | -- | -- | 0.599 | -- | -- | -- | -- | -- |
| 1087.1 | 1.54 | 6.27 | -- | 0.245 | -- | -- | -- | 0.54 | 17.6 | -- | -- | -- | -- |
| 952.18 | 1.44 | 6.39 | -- | -- | -2.07 | -- | -- | 0.0111 | -- | 1.203 | 2897 | 5.36 | 0.943 |
| 1090.21 | 1.54 | 6.27 | -- | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 648.38 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 2 | 648.40 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 649.34 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 21 | 669.13 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 29 | 672.48 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 56 | 686.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 89 | 694.29 | wind | 1 | 14400 | < th | dose dependent | sin | 5 | NA |
| 109 | 697.90 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 128 | 700.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 17 |
| 167 | 706.68 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 171 | 707.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 195 | 710.01 | wind | 1 | 14400 | < th | dose independent | sin | 5 | NA |
| 240 | 713.10 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 241 | 713.13 | wind | 1 | 14400 | > th | dose independent | sin | 5 | NA |
| 242 | 713.30 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 254 | 714.17 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 276 | 715.44 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 290 | 716.21 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 445 | 724.96 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 576 | 730.60 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 583 | 731.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 679 | 735.41 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 705 | 736.68 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 740 | 738.40 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 743 | 738.55 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 754 | 738.83 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 777 | 739.93 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 797 | 740.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 798 | 740.85 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 867 | 743.81 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 878 | 744.10 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 907 | 745.27 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 955 | 746.96 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 967 | 747.30 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 986 | 747.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 2 |