Os07g0599300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0599300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 438.71 | 0.984 | 3.35 | 0.394 | 0.31 | 0.153 | 0.509 | 3.53 | -0.224 | 1.88 | 49 | 2223 | -- | -- |
| 440 | 0.977 | 3.4 | 0.202 | 0.315 | 1.48 | 0.634 | -- | -0.236 | 1.84 | 47.63 | 2357 | -- | -- |
| 439.58 | 0.976 | 3.35 | 0.38 | 0.308 | 0.146 | -- | 3.67 | -0.225 | 1.34 | 49 | 2262 | -- | -- |
| 441.53 | 0.979 | 3.41 | 0.178 | 0.312 | 1.52 | -- | -- | -0.238 | 1.45 | 47.53 | 2301 | -- | -- |
| 444.94 | 0.982 | 3.34 | 0.386 | -- | 0.417 | -- | 3.57 | -0.19 | -- | 51 | 2367 | -- | -- |
| 458.16 | 1 | 3.41 | 0.444 | 0.357 | -- | 0.812 | -- | -0.268 | 1.74 | -- | -- | -- | -- |
| 460.62 | 1.01 | 3.41 | 0.419 | 0.357 | -- | -- | -- | -0.272 | 1.22 | -- | -- | -- | -- |
| 446.74 | 0.984 | 3.4 | 0.202 | -- | 1.45 | -- | -- | -0.179 | -- | 48 | 2167 | -- | -- |
| 442.3 | 0.98 | 3.41 | -- | 0.313 | 1.6 | -- | -- | -0.255 | 1.46 | 48 | 2312 | -- | -- |
| 468.51 | 1.01 | 3.41 | 0.433 | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
| 465.24 | 1.01 | 3.42 | -- | 0.364 | -- | -- | -- | -0.319 | 1.26 | -- | -- | -- | -- |
| 447.01 | 0.985 | 3.39 | -- | -- | 1.5 | -- | -- | -0.197 | -- | 48.26 | 2263 | -- | -- |
| 473.45 | 1.02 | 3.42 | -- | -- | -- | -- | -- | -0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 434.60 | humidity | 80 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 434.66 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 3 | 434.72 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 5 | 434.84 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 2 |
| 6 | 434.88 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 10 | 435.05 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 3 |
| 11 | 435.10 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 1 |
| 13 | 435.31 | humidity | 60 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 24 | 435.92 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 26 | 436.01 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 9 |
| 28 | 436.17 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 13 |
| 31 | 436.28 | humidity | 60 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 35 | 436.36 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 1 | 1 |
| 36 | 436.37 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 52 | 436.41 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 12 |
| 56 | 436.44 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 60 | 436.51 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 13 |
| 89 | 436.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 91 | 436.78 | humidity | 50 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 94 | 436.80 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 98 | 436.83 | humidity | 50 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 177 | 437.54 | humidity | 90 | 720 | < th | dose independent | rect. | 16 | 6 |
| 179 | 437.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 183 | 437.58 | humidity | 80 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 224 | 437.82 | humidity | 50 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 249 | 437.98 | humidity | 50 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 250 | 437.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 329 | 438.63 | humidity | 50 | 1440 | > th | dose independent | sin | 3 | NA |
| 330 | 438.64 | humidity | 60 | 1440 | < th | dose dependent | sin | 4 | NA |
| 348 | 438.84 | humidity | 50 | 1440 | < th | dose independent | sin | 3 | NA |
| 356 | 438.93 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 24 | 13 |
| 386 | 439.00 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 446 | 439.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 457 | 439.17 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 489 | 439.22 | humidity | 90 | 720 | > th | dose independent | rect. | 8 | 14 |
| 551 | 439.48 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 553 | 439.48 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 555 | 439.48 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 559 | 439.50 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 567 | 439.52 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 575 | 439.55 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 599 | 439.57 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 600 | 439.57 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 22 |
| 603 | 439.58 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 607 | 439.58 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 613 | 439.59 | humidity | 50 | 1440 | < th | dose independent | no | NA | NA |
| 765 | 439.60 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 779 | 439.61 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 796 | 439.63 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 813 | 439.65 | humidity | 50 | 1440 | > th | dose independent | no | NA | NA |
| 834 | 439.65 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 862 | 439.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 959 | 439.93 | temperature | 25 | 30 | < th | dose independent | rect. | 4 | 22 |
| 961 | 440.00 | wind | 3 | 1440 | < th | dose independent | rect. | 13 | 1 |