Os07g0599100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0599100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.47	(0.0291)	R²	:	0.821
β₁	:	2.49	(0.111)	R²_dD	:	0.238	R²_D	:	0.117
β₂	:	3.11	(0.075)	R²_dC	:	0.679	R²_C	:	0.577
β₃	:	1.91	(0.142)	R²_dE	:	0.0912	R²_E	:	-0.0916
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.678	(0.0664)	R²_dN8	:	0.0679	R²_N8	:	-0.0442
σ	:	0.534
deviance	:	131.53
__

_____

C
peak time of C	:	19
E
wheather	:	temperature
threshold	:	24.47
memory length	:	335
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
122.92	0.521	5.42	3.07	3.27	1.75	0.694	-2.6	0.853	19.3	27.95	646	--	--
129.8	0.531	5.46	2.62	3.26	2	1.28	--	0.798	19.4	27.09	648	--	--
123.78	0.518	5.41	3.09	3.28	1.72	--	-2.79	0.856	19.3	27.52	583	--	--
131.53	0.534	5.47	2.49	3.11	1.91	--	--	0.678	19	24.47	335	--	--
565.98	1.11	5.32	3.27	--	1.83	--	-3.21	0.803	--	35.35	1385	--	--
178.83	0.627	5.56	2.07	2.9	--	1.34	--	0.333	19.2	--	--	--	--
183.6	0.635	5.55	2.04	2.91	--	--	--	0.336	19.2	--	--	--	--
572.58	1.11	5.39	2.6	--	1.94	--	--	0.727	--	28.2	1385	--	--
282.31	0.783	5.58	--	2.94	0.865	--	--	0.235	19.2	24.3	302	--	--
629.97	1.17	5.49	1.99	--	--	--	--	0.285	--	--	--	--	--
293.8	0.802	5.61	--	2.88	--	--	--	0.108	19.2	--	--	--	--
718.19	1.25	5.51	--	--	0.963	--	--	0.202	--	24.3	302	--	--
734.6	1.27	5.54	--	--	--	--	--	0.0642	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	118.21	temperature	30	720	< th	dose dependent	rect.	12	21
26	121.66	temperature	10	720	> th	dose dependent	rect.	14	22
39	122.46	temperature	30	720	< th	dose dependent	rect.	3	22
40	122.47	temperature	10	1440	> th	dose dependent	rect.	18	5
46	122.55	temperature	30	1440	< th	dose dependent	rect.	17	6
50	122.61	temperature	10	1440	> th	dose dependent	sin	16	NA
57	122.70	temperature	30	720	< th	dose dependent	sin	12	NA
60	122.72	temperature	10	1440	> th	dose dependent	rect.	14	13
70	122.76	temperature	10	1440	> th	dose dependent	rect.	15	10
78	122.79	temperature	30	1440	< th	dose dependent	rect.	15	9
105	122.87	temperature	30	720	< th	dose dependent	rect.	7	23
115	122.90	temperature	10	1440	> th	dose dependent	rect.	20	2
123	122.92	temperature	30	1440	< th	dose dependent	sin	16	NA
133	122.94	temperature	15	720	> th	dose dependent	rect.	15	18
325	123.45	temperature	30	720	< th	dose dependent	no	NA	NA
368	123.54	temperature	10	1440	> th	dose dependent	rect.	2	22
404	123.62	temperature	10	1440	> th	dose dependent	no	NA	NA
428	123.65	temperature	10	1440	> th	dose dependent	rect.	17	23
456	123.69	temperature	25	270	< th	dose dependent	rect.	19	23
475	123.72	temperature	10	1440	> th	dose dependent	rect.	20	23
592	123.95	temperature	30	720	< th	dose dependent	rect.	17	23
773	124.28	temperature	30	1440	< th	dose dependent	rect.	20	23
923	124.67	wind	9	43200	> th	dose dependent	rect.	19	6