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Os07g0599000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0188) R2 : 0.69
β1 : 1.63 (0.0687) R2dD : 0.399 R2D : 0.349
β2 : 1.06 (0.0488) R2dC : 0.324 R2C : 0.299
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.211 (0.0401) R2dN8 : 0.0252 R2N8 : -0.0191
σ : 0.353
deviance : 56.79
__
_____
C
peak time of C : 17.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.39 0.32 10.4 2.05 1.03 -0.63 0.076 1.17 0.272 17.5 26.7 1205 -- --
46.63 0.318 10.4 1.77 1.02 -0.51 0.068 -- 0.21 17.4 26.98 1184 -- --
46.4 0.317 10.4 2.05 1.03 -0.631 -- 1.17 0.272 17.5 26.7 1203 -- --
46.64 0.318 10.4 1.78 1.03 -0.503 -- -- 0.207 17.5 27.15 1184 -- --
99.39 0.464 10.4 2.19 -- -0.798 -- 1.4 0.394 -- 24.18 1267 -- --
56.72 0.353 10.4 1.63 1.06 -- 0.167 -- 0.21 17.1 -- -- -- --
56.79 0.353 10.4 1.63 1.06 -- -- -- 0.211 17.1 -- -- -- --
99.82 0.465 10.4 1.81 -- -0.668 -- -- 0.286 -- 24.32 1265 -- --
124.44 0.52 10.5 -- 0.995 -0.247 -- -- -0.0264 17.4 32.3 1080 -- --
115.88 0.503 10.4 1.59 -- -- -- -- 0.184 -- -- -- -- --
127.02 0.527 10.5 -- 1.03 -- -- -- 0.0288 17.2 -- -- -- --
158.88 0.587 10.5 -- -- 0.923 -- -- -0.0855 -- 24.2 190 -- --
182.96 0.631 10.5 -- -- -- -- -- 0.00684 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.91 wind 5.0 270 < th dose independent rect. 3 2
2 42.34 precipitation 0.1 270 < th dose independent rect. 3 2
3 42.34 precipitation 0.1 270 < th dose dependent rect. 3 2
5 42.82 wind 5.0 90 < th dose independent rect. 3 5
6 42.90 wind 7.0 90 < th dose dependent rect. 3 5
7 42.92 temperature 10.0 270 > th dose dependent rect. 3 2
8 42.97 wind 9.0 270 < th dose dependent rect. 3 2
13 43.19 temperature 10.0 270 > th dose independent rect. 3 2
15 43.19 temperature 30.0 270 < th dose independent rect. 3 2
16 43.19 humidity 50.0 270 > th dose independent rect. 3 2
19 43.19 atmosphere 995.0 270 > th dose independent rect. 3 2
20 43.19 atmosphere 1010.0 270 < th dose independent rect. 3 2
22 43.19 radiation 20.0 270 < th dose independent rect. 3 2
25 43.19 temperature 10.0 270 > th dose independent rect. 5 22
26 43.20 radiation 40.0 270 < th dose dependent rect. 3 2
29 43.22 wind 9.0 270 < th dose independent rect. 5 22
30 43.22 radiation 1.0 270 < th dose dependent rect. 3 2
33 43.25 radiation 1.0 270 < th dose independent rect. 3 2
37 43.36 wind 5.0 270 < th dose independent rect. 1 6
38 43.42 precipitation 0.1 90 < th dose independent rect. 3 5
39 43.42 precipitation 0.1 90 < th dose dependent rect. 3 5
42 43.59 temperature 10.0 90 > th dose dependent rect. 3 5
43 43.64 wind 5.0 10 < th dose dependent rect. 4 4
48 43.72 wind 1.0 270 > th dose independent rect. 3 1
52 43.78 atmosphere 1005.0 270 > th dose independent rect. 3 2
55 43.84 atmosphere 1000.0 90 > th dose dependent rect. 3 5
57 43.85 humidity 50.0 270 > th dose dependent rect. 3 2
58 43.86 wind 9.0 90 < th dose independent rect. 8 19
65 43.92 temperature 10.0 90 > th dose independent rect. 3 5
67 43.92 temperature 30.0 90 < th dose independent rect. 3 5
68 43.92 humidity 50.0 90 > th dose independent rect. 3 5
70 43.92 atmosphere 995.0 90 > th dose independent rect. 3 5
71 43.92 atmosphere 1015.0 90 < th dose independent rect. 3 5
72 43.92 temperature 10.0 90 > th dose independent rect. 8 19
74 43.94 atmosphere 1000.0 270 > th dose dependent rect. 3 2
75 43.98 radiation 40.0 90 < th dose independent rect. 3 5
90 44.15 atmosphere 1005.0 90 > th dose independent rect. 3 5
94 44.18 temperature 10.0 270 > th dose dependent rect. 1 6
96 44.22 precipitation 0.1 90 < th dose independent rect. 8 19
97 44.22 precipitation 0.1 90 < th dose dependent rect. 8 19
103 44.30 precipitation 0.1 270 < th dose independent rect. 1 6
104 44.30 precipitation 0.1 270 < th dose dependent rect. 1 6
110 44.36 radiation 1.0 270 < th dose dependent rect. 5 21
112 44.39 wind 5.0 10 < th dose independent rect. 4 4
113 44.40 atmosphere 995.0 270 > th dose independent rect. 5 22
114 44.42 atmosphere 995.0 90 > th dose independent rect. 8 19
116 44.43 wind 9.0 270 < th dose independent rect. 6 20
117 44.44 temperature 10.0 10 > th dose dependent rect. 4 4
120 44.46 precipitation 0.1 270 < th dose independent rect. 5 22
123 44.46 atmosphere 1000.0 10 > th dose dependent rect. 4 4
124 44.46 wind 9.0 270 < th dose dependent rect. 1 6
125 44.46 precipitation 0.1 270 < th dose dependent rect. 5 22
141 44.50 temperature 10.0 270 > th dose independent rect. 6 20
153 44.57 radiation 40.0 270 < th dose dependent rect. 2 4
161 44.65 atmosphere 995.0 270 > th dose independent rect. 6 20
168 44.68 precipitation 0.1 10 < th dose independent rect. 4 4
170 44.68 precipitation 0.1 10 < th dose dependent rect. 4 4
205 44.78 humidity 50.0 90 > th dose independent rect. 8 19
210 44.79 radiation 40.0 270 < th dose dependent rect. 1 6
217 44.81 temperature 10.0 270 > th dose independent rect. 1 6
219 44.81 temperature 30.0 270 < th dose independent rect. 1 6
220 44.81 humidity 50.0 270 > th dose independent rect. 1 6
222 44.81 atmosphere 995.0 270 > th dose independent rect. 1 6
223 44.81 atmosphere 1015.0 270 < th dose independent rect. 1 6
224 44.81 radiation 20.0 270 < th dose independent rect. 1 6
248 44.85 temperature 10.0 10 > th dose independent rect. 4 4
250 44.85 temperature 30.0 10 < th dose independent rect. 4 4
251 44.85 humidity 50.0 10 > th dose independent rect. 4 4
253 44.85 atmosphere 995.0 10 > th dose independent rect. 4 4
254 44.85 atmosphere 1015.0 10 < th dose independent rect. 4 4
256 44.85 temperature 10.0 10 > th dose independent rect. 8 20
269 44.90 wind 9.0 10 < th dose independent rect. 8 20
286 44.96 radiation 40.0 90 < th dose dependent rect. 3 6
302 45.02 precipitation 0.1 270 < th dose independent rect. 6 20
303 45.02 precipitation 0.1 270 < th dose dependent rect. 6 20
337 45.12 radiation 40.0 10 < th dose independent rect. 4 4
375 45.21 atmosphere 995.0 10 > th dose independent rect. 8 20
378 45.22 humidity 50.0 270 > th dose dependent rect. 18 8
400 45.30 humidity 50.0 270 > th dose dependent rect. 2 4
404 45.31 humidity 50.0 270 > th dose independent rect. 5 22
406 45.32 humidity 50.0 270 > th dose independent rect. 6 20
412 45.34 radiation 1.0 270 < th dose dependent rect. 12 14
437 45.39 radiation 1.0 270 < th dose independent rect. 5 21
460 45.43 atmosphere 995.0 90 > th dose dependent rect. 8 19
464 45.45 temperature 25.0 1440 > th dose dependent rect. 15 1
468 45.45 radiation 40.0 90 < th dose dependent rect. 3 8
492 45.52 temperature 15.0 270 > th dose independent rect. 14 16
493 45.52 precipitation 0.1 270 < th dose independent rect. 14 16
497 45.52 precipitation 0.1 270 < th dose dependent rect. 14 16
526 45.60 precipitation 0.1 270 < th dose independent rect. 2 16
527 45.60 precipitation 0.1 270 < th dose dependent rect. 2 16
565 45.67 radiation 1.0 270 < th dose dependent rect. 17 9
566 45.67 temperature 10.0 270 > th dose dependent rect. 13 17
575 45.68 radiation 1.0 270 < th dose independent rect. 12 14
621 45.75 radiation 20.0 90 < th dose independent rect. 3 8
715 45.93 radiation 1.0 270 < th dose independent rect. 17 9
724 45.94 humidity 60.0 90 > th dose dependent rect. 21 6
745 45.99 humidity 50.0 270 > th dose dependent rect. 1 6
755 46.01 wind 1.0 90 > th dose independent rect. 8 19
762 46.02 atmosphere 995.0 270 > th dose independent rect. 18 8
789 46.08 wind 9.0 270 < th dose independent rect. 6 8
828 46.11 temperature 10.0 270 > th dose independent rect. 6 8
829 46.11 atmosphere 995.0 270 > th dose independent rect. 6 8
830 46.11 atmosphere 1015.0 270 < th dose independent rect. 6 8
837 46.12 humidity 90.0 720 < th dose dependent rect. 20 1
863 46.15 precipitation 0.1 270 < th dose independent rect. 6 8
865 46.15 precipitation 0.1 270 < th dose dependent rect. 6 8
885 46.18 temperature 10.0 10 > th dose dependent rect. 16 16
887 46.19 wind 9.0 270 < th dose independent rect. 18 8
890 46.19 atmosphere 1015.0 270 < th dose dependent rect. 3 2
896 46.20 humidity 60.0 270 > th dose independent rect. 18 8
900 46.21 temperature 10.0 270 > th dose independent rect. 18 8
905 46.21 temperature 10.0 270 > th dose independent rect. 2 16
906 46.21 atmosphere 1015.0 270 < th dose independent rect. 2 16
928 46.24 radiation 40.0 10 < th dose dependent rect. 4 4
932 46.24 temperature 25.0 1440 > th dose dependent rect. 13 18
941 46.26 temperature 30.0 270 < th dose independent rect. 18 8
965 46.29 temperature 10.0 10 > th dose dependent rect. 14 18
968 46.30 temperature 15.0 270 > th dose independent rect. 11 10
969 46.30 wind 9.0 270 < th dose independent rect. 14 16
976 46.31 atmosphere 1015.0 90 < th dose independent rect. 8 19
977 46.31 temperature 10.0 270 > th dose dependent rect. 11 10