Os07g0598700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0598700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.8 | 0.209 | 9.68 | 0.357 | 0.288 | -0.481 | -0.338 | 1.96 | 0.0464 | 19.8 | 25.8 | 193 | -- | -- |
| 20.8 | 0.212 | 9.7 | 0.127 | 0.283 | -0.323 | -0.346 | -- | -0.00949 | 19.9 | 25.8 | 139 | -- | -- |
| 20.07 | 0.209 | 9.68 | 0.358 | 0.286 | -0.493 | -- | 1.92 | 0.0359 | 19.6 | 26.05 | 161 | -- | -- |
| 20.93 | 0.213 | 9.71 | 0.151 | 0.279 | -0.334 | -- | -- | -0.0092 | 19.9 | 25.8 | 133 | -- | -- |
| 22.93 | 0.224 | 9.68 | 0.294 | -- | -0.464 | -- | 1.82 | 0.017 | -- | 26.81 | 54 | -- | -- |
| 22.19 | 0.221 | 9.71 | 0.0949 | 0.229 | -- | -0.304 | -- | -0.0176 | 21.8 | -- | -- | -- | -- |
| 22.54 | 0.222 | 9.71 | 0.106 | 0.23 | -- | -- | -- | -0.0172 | 21.8 | -- | -- | -- | -- |
| 23.75 | 0.228 | 9.7 | 0.145 | -- | -0.324 | -- | -- | -0.0139 | -- | 26.7 | 10 | -- | -- |
| 21.52 | 0.216 | 9.71 | -- | 0.254 | -0.285 | -- | -- | -0.0231 | 20.2 | 26.24 | 121 | -- | -- |
| 25.71 | 0.237 | 9.7 | 0.109 | -- | -- | -- | -- | -0.0172 | -- | -- | -- | -- | -- |
| 22.84 | 0.224 | 9.71 | -- | 0.231 | -- | -- | -- | -0.029 | 21.9 | -- | -- | -- | -- |
| 24.29 | 0.23 | 9.7 | -- | -- | -0.301 | -- | -- | -0.03 | -- | 26.7 | 10 | -- | -- |
| 26.02 | 0.238 | 9.7 | -- | -- | -- | -- | -- | -0.0293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 5 | 19.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 12 |
| 17 | 19.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 18 | 19.23 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 78 | 19.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 115 | 19.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 138 | 19.86 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 145 | 19.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 148 | 19.89 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 199 | 19.95 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 8 |
| 210 | 19.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 215 | 19.97 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 262 | 20.02 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 263 | 20.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 264 | 20.02 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 287 | 20.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 302 | 20.05 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 319 | 20.06 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 329 | 20.07 | temperature | 30 | 270 | < th | dose independent | sin | 6 | NA |
| 335 | 20.07 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 343 | 20.07 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 360 | 20.08 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 371 | 20.09 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 9 |
| 381 | 20.09 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 502 | 20.13 | wind | 1 | 30 | > th | dose independent | rect. | 12 | 18 |
| 505 | 20.13 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 526 | 20.14 | temperature | 30 | 14400 | > th | dose independent | sin | 12 | NA |
| 527 | 20.14 | temperature | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 619 | 20.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 639 | 20.17 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 642 | 20.17 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 8 |
| 730 | 20.19 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 783 | 20.20 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 792 | 20.20 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 830 | 20.21 | humidity | 70 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 832 | 20.21 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 6 |
| 842 | 20.21 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 889 | 20.22 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 894 | 20.22 | humidity | 70 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 905 | 20.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 10 |