Os07g0598400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase family 79, N-terminal protein.
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Os07g0598400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase family 79, N-terminal protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.82 | 0.632 | 3.3 | -0.548 | 0.358 | -2.29 | 0.661 | 10.5 | -0.0596 | 12.4 | 1000 | 665 | -- | -- |
| 192.96 | 0.652 | 3.2 | 0.0193 | 0.296 | -0.449 | 0.794 | -- | -0.0763 | 12.4 | 1000 | 665 | -- | -- |
| 182.69 | 0.63 | 3.3 | -0.541 | 0.359 | -2.36 | -- | 10.9 | -0.054 | 12.4 | 999.9 | 665 | -- | -- |
| 192.63 | 0.651 | 3.19 | 0.0611 | 0.287 | -0.507 | -- | -- | -0.0551 | 12.3 | 1002 | 304 | -- | -- |
| 190.59 | 0.643 | 3.3 | -0.535 | -- | -2.34 | -- | 10.7 | -0.0554 | -- | 999.9 | 661 | -- | -- |
| 198.49 | 0.66 | 3.2 | 0.0989 | 0.306 | -- | 0.824 | -- | -0.106 | 12.5 | -- | -- | -- | -- |
| 201.4 | 0.665 | 3.2 | 0.13 | 0.304 | -- | -- | -- | -0.102 | 12.5 | -- | -- | -- | -- |
| 197.79 | 0.658 | 3.2 | 0.0493 | -- | -0.524 | -- | -- | -0.0579 | -- | 1002 | 304 | -- | -- |
| 192.73 | 0.65 | 3.19 | -- | 0.286 | -0.513 | -- | -- | -0.0612 | 12.2 | 1002 | 304 | -- | -- |
| 207.19 | 0.673 | 3.21 | 0.12 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 201.85 | 0.665 | 3.21 | -- | 0.302 | -- | -- | -- | -0.117 | 12.4 | -- | -- | -- | -- |
| 197.85 | 0.657 | 3.2 | -- | -- | -0.529 | -- | -- | -0.0629 | -- | 1002 | 304 | -- | -- |
| 207.57 | 0.672 | 3.21 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.96 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 2 | 172.99 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 3 | 173.06 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 1 |
| 6 | 173.06 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 26 | 173.16 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 86 | 173.16 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 149 | 177.59 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 21 | 18 |
| 154 | 178.51 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 16 | 16 |
| 157 | 178.74 | atmosphere | 995 | 4320 | < th | dose dependent | sin | 6 | NA |
| 158 | 178.80 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 166 | 179.25 | atmosphere | 1000 | 720 | < th | dose independent | sin | 13 | NA |
| 195 | 180.31 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 16 | 22 |
| 205 | 180.45 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 18 | 23 |
| 228 | 180.86 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 20 | 21 |
| 255 | 181.09 | atmosphere | 1000 | 720 | > th | dose independent | no | NA | NA |
| 256 | 181.09 | atmosphere | 1000 | 720 | < th | dose independent | no | NA | NA |
| 268 | 181.29 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 5 | 23 |
| 274 | 181.31 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 23 | 23 |
| 288 | 181.50 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 23 |
| 323 | 181.86 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 20 |
| 337 | 182.05 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 15 |
| 345 | 182.16 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 17 |
| 377 | 182.73 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 4 | 23 |
| 394 | 182.91 | atmosphere | 1000 | 720 | > th | dose independent | sin | 17 | NA |
| 406 | 183.10 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 23 |
| 407 | 183.11 | atmosphere | 1000 | 720 | < th | dose independent | sin | 4 | NA |
| 422 | 183.34 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 10 | 23 |
| 437 | 183.49 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 9 |
| 438 | 183.49 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 12 |
| 450 | 183.62 | atmosphere | 1000 | 720 | > th | dose independent | sin | 5 | NA |
| 457 | 183.76 | atmosphere | 995 | 4320 | < th | dose independent | sin | 7 | NA |
| 469 | 183.89 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 505 | 184.26 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 23 |
| 520 | 184.40 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 18 | 1 |
| 583 | 184.98 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 584 | 185.01 | wind | 9 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 585 | 185.01 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 590 | 185.01 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 738 | 185.01 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 739 | 185.01 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 744 | 185.01 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 891 | 185.02 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 23 |
| 900 | 185.14 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 4 | 1 |
| 902 | 185.14 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 909 | 185.18 | atmosphere | 995 | 4320 | > th | dose independent | sin | 7 | NA |
| 915 | 185.20 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 938 | 185.34 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 939 | 185.36 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 13 | 1 |
| 948 | 185.40 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 988 | 185.45 | atmosphere | 1000 | 720 | > th | dose independent | sin | 14 | NA |