Os07g0598300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os07g0598300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.69 | 0.357 | 5.06 | -0.0449 | 0.312 | -1.5 | 0.28 | -0.274 | -0.155 | 18.2 | 28.92 | 161 | -- | -- |
| 57.71 | 0.354 | 5.07 | -0.0936 | 0.305 | -1.49 | 0.376 | -- | -0.169 | 17.7 | 28.82 | 188 | -- | -- |
| 57.86 | 0.354 | 5.06 | -0.0333 | 0.308 | -1.52 | -- | -0.365 | -0.15 | 18.4 | 29.14 | 154 | -- | -- |
| 58.03 | 0.355 | 5.07 | -0.0922 | 0.309 | -1.51 | -- | -- | -0.156 | 18.3 | 29.43 | 154 | -- | -- |
| 61.08 | 0.364 | 5.06 | -0.0862 | -- | -1.74 | -- | -0.398 | -0.192 | -- | 29.7 | 216 | -- | -- |
| 88.12 | 0.44 | 5 | 0.281 | 0.733 | -- | 0.55 | -- | 0.14 | 16.5 | -- | -- | -- | -- |
| 88.93 | 0.442 | 5 | 0.284 | 0.737 | -- | -- | -- | 0.143 | 16.6 | -- | -- | -- | -- |
| 61.23 | 0.364 | 5.07 | -0.158 | -- | -1.75 | -- | -- | -0.209 | -- | 29.91 | 216 | -- | -- |
| 58.24 | 0.355 | 5.07 | -- | 0.316 | -1.48 | -- | -- | -0.147 | 18.3 | 29.41 | 152 | -- | -- |
| 117.9 | 0.507 | 5 | 0.256 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 91.06 | 0.446 | 5.01 | -- | 0.732 | -- | -- | -- | 0.111 | 16.6 | -- | -- | -- | -- |
| 61.87 | 0.366 | 5.06 | -- | -- | -1.7 | -- | -- | -0.18 | -- | 30.14 | 208 | -- | -- |
| 119.63 | 0.511 | 5 | -- | -- | -- | -- | -- | 0.095 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 8 | 58.14 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 9 | 58.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 11 | 58.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 14 | 58.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 15 | 58.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 58.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 18 | 58.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 19 | 58.47 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 22 | 58.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 36 | 59.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 39 | 59.06 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 48 | 59.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 57 | 59.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 58 | 59.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 59 | 59.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 60 | 59.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 65 | 59.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 71 | 60.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 132 | 60.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 139 | 60.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 143 | 60.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 149 | 60.87 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 151 | 60.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 165 | 60.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 175 | 60.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 212 | 61.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 299 | 61.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 304 | 61.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 357 | 61.54 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 496 | 61.90 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 559 | 62.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 584 | 62.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 587 | 62.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 602 | 62.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 745 | 62.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 824 | 63.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 829 | 63.11 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 838 | 63.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 867 | 63.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 878 | 63.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 898 | 63.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 899 | 63.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |