Os07g0597200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0597200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.24 | 0.572 | 8.12 | 3.48 | 1.39 | -1.81 | 0.601 | 3.58 | 1.31 | 22.9 | 25.93 | 1393 | -- | -- |
| 163.37 | 0.595 | 8.21 | 2.44 | 1.51 | -1.67 | 0.756 | -- | 1.16 | 23 | 25.9 | 1270 | -- | -- |
| 149.73 | 0.57 | 8.11 | 3.5 | 1.38 | -1.82 | -- | 3.74 | 1.32 | 22.9 | 25.95 | 1393 | -- | -- |
| 162.3 | 0.593 | 8.21 | 2.4 | 1.45 | -1.57 | -- | -- | 1.01 | 23.1 | 26 | 1391 | -- | -- |
| 261.99 | 0.754 | 8.09 | 3.5 | -- | -1.71 | -- | 3.72 | 1.29 | -- | 25.9 | 1501 | -- | -- |
| 232.03 | 0.714 | 8.36 | 1.87 | 1.29 | -- | 0.722 | -- | 0.463 | 22.5 | -- | -- | -- | -- |
| 234.17 | 0.717 | 8.36 | 1.84 | 1.28 | -- | -- | -- | 0.46 | 22.6 | -- | -- | -- | -- |
| 252.7 | 0.744 | 8.24 | 2.29 | -- | -1.07 | -- | -- | 0.857 | -- | 23.1 | 5884 | -- | -- |
| 294.46 | 0.799 | 8.34 | -- | 1.35 | -0.927 | -- | -- | 0.558 | 23 | 25.46 | 1387 | -- | -- |
| 335.23 | 0.856 | 8.32 | 1.86 | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
| 323.5 | 0.841 | 8.4 | -- | 1.29 | -- | -- | -- | 0.255 | 22.7 | -- | -- | -- | -- |
| 375.83 | 0.906 | 8.3 | -- | -- | -0.726 | -- | -- | 0.567 | -- | 25.46 | 1387 | -- | -- |
| 426.9 | 0.964 | 8.37 | -- | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 4 | 148.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 10 | 148.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 48 | 148.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 58 | 149.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 135 | 150.45 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 139 | 150.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 157 | 150.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 222 | 151.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 223 | 151.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 237 | 151.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 281 | 151.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 282 | 151.84 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 324 | 152.14 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 404 | 152.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 502 | 153.49 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 829 | 155.24 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 859 | 155.42 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 873 | 155.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 924 | 155.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 934 | 155.85 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |