Os07g0597100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0597100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.51 | 0.251 | 12.6 | 0.0982 | 0.126 | -0.952 | 0.0716 | 0.303 | 0.237 | 0.0267 | 22.86 | 793 | -- | -- |
| 28.61 | 0.249 | 12.6 | 0.129 | 0.122 | -1 | 0.0566 | -- | 0.239 | 23.8 | 22.8 | 831 | -- | -- |
| 28.53 | 0.249 | 12.6 | 0.0975 | 0.127 | -0.956 | -- | 0.278 | 0.237 | 0.119 | 22.86 | 777 | -- | -- |
| 28.6 | 0.249 | 12.6 | 0.128 | 0.121 | -1.01 | -- | -- | 0.24 | 23.8 | 22.8 | 838 | -- | -- |
| 29.44 | 0.253 | 12.6 | 0.0939 | -- | -1.04 | -- | 0.162 | 0.232 | -- | 22.9 | 839 | -- | -- |
| 40.92 | 0.3 | 12.6 | 0.394 | 0.226 | -- | -0.0542 | -- | 0.398 | 23.5 | -- | -- | -- | -- |
| 40.94 | 0.3 | 12.6 | 0.397 | 0.226 | -- | -- | -- | 0.399 | 23.5 | -- | -- | -- | -- |
| 29.47 | 0.253 | 12.6 | 0.115 | -- | -1.07 | -- | -- | 0.234 | -- | 22.81 | 850 | -- | -- |
| 28.97 | 0.251 | 12.6 | -- | 0.115 | -1.08 | -- | -- | 0.222 | 23.8 | 22.73 | 857 | -- | -- |
| 44.15 | 0.31 | 12.6 | 0.403 | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
| 45.08 | 0.314 | 12.6 | -- | 0.231 | -- | -- | -- | 0.354 | 23.6 | -- | -- | -- | -- |
| 29.77 | 0.254 | 12.6 | -- | -- | -1.13 | -- | -- | 0.215 | -- | 22.8 | 855 | -- | -- |
| 48.43 | 0.325 | 12.6 | -- | -- | -- | -- | -- | 0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 24 | 29.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 40 | 29.49 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 52 | 29.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 56 | 29.56 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 82 | 29.74 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 85 | 29.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 88 | 29.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 102 | 29.83 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 22 |
| 103 | 29.84 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 20 |
| 117 | 29.88 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 21 |
| 118 | 29.88 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 135 | 29.94 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 149 | 29.98 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 157 | 30.00 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 170 | 30.04 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 23 |
| 175 | 30.05 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 183 | 30.07 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 197 | 30.10 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 207 | 30.12 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 212 | 30.14 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 229 | 30.18 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 232 | 30.19 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 308 | 30.38 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 339 | 30.49 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 343 | 30.50 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 403 | 30.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 418 | 30.75 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 429 | 30.78 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 432 | 30.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 612 | 31.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 630 | 31.02 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 699 | 31.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 772 | 31.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 986 | 31.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |