Os07g0596900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SUSIBA2-like (WRKY transcription factor 80).
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Os07g0596900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SUSIBA2-like (WRKY transcription factor 80).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.86 | 0.43 | 7.89 | -1.19 | 1.59 | 2.31 | 0.794 | -0.748 | 0.392 | 23.1 | 21.1 | 5252 | -- | -- |
| 84.57 | 0.428 | 7.92 | -1.32 | 1.59 | 2.43 | 0.836 | -- | 0.356 | 23 | 21.2 | 5242 | -- | -- |
| 86.53 | 0.433 | 7.89 | -1.21 | 1.58 | 2.3 | -- | -0.822 | 0.392 | 23.1 | 21.14 | 5250 | -- | -- |
| 87.37 | 0.435 | 7.92 | -1.38 | 1.59 | 2.42 | -- | -- | 0.352 | 23.1 | 21.19 | 5250 | -- | -- |
| 232.39 | 0.71 | 7.87 | -1.23 | -- | 2.29 | -- | -0.743 | 0.38 | -- | 21.1 | 4505 | -- | -- |
| 203.37 | 0.669 | 8.1 | -2.88 | 1.5 | -- | 0.809 | -- | -0.426 | 23 | -- | -- | -- | -- |
| 206.15 | 0.672 | 8.1 | -2.91 | 1.5 | -- | -- | -- | -0.429 | 23 | -- | -- | -- | -- |
| 233.51 | 0.712 | 7.87 | -1.42 | -- | 2.33 | -- | -- | 0.344 | -- | 21.1 | 4514 | -- | -- |
| 82.25 | 0.422 | 7.83 | -- | 1.57 | 2.93 | -- | -- | 0.665 | 23.4 | 20.2 | 23931 | -- | -- |
| 345.48 | 0.869 | 8.06 | -2.88 | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
| 429.58 | 0.97 | 8.03 | -- | 1.47 | -- | -- | -- | -0.105 | 22.9 | -- | -- | -- | -- |
| 225.67 | 0.7 | 7.81 | -- | -- | 2.95 | -- | -- | 0.607 | -- | 19.3 | 21800 | -- | -- |
| 563.95 | 1.11 | 7.99 | -- | -- | -- | -- | -- | -0.0986 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.01 | temperature | 20 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 2 | 74.02 | temperature | 20 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 17 | 74.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 55 | 74.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 99 | 74.96 | temperature | 20 | 43200 | < th | dose dependent | sin | 11 | NA |
| 112 | 75.11 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 120 | 75.15 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 140 | 75.26 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 162 | 75.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 171 | 75.41 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 174 | 75.42 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 194 | 75.48 | temperature | 15 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 228 | 75.58 | radiation | 1 | 43200 | < th | dose dependent | sin | 12 | NA |
| 235 | 75.60 | temperature | 20 | 43200 | < th | dose independent | sin | 16 | NA |
| 248 | 75.62 | temperature | 15 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 293 | 75.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 319 | 75.76 | temperature | 20 | 43200 | > th | dose independent | sin | 16 | NA |
| 326 | 75.77 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 338 | 75.79 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 342 | 75.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 366 | 75.85 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 376 | 75.86 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 377 | 75.86 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 379 | 75.86 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 389 | 75.87 | temperature | 20 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 408 | 75.89 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 417 | 75.90 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 469 | 75.94 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 496 | 75.96 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 506 | 75.97 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 544 | 76.00 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 22 |
| 546 | 76.00 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 596 | 76.04 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 621 | 76.05 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 626 | 76.06 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 678 | 76.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 701 | 76.11 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 726 | 76.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 727 | 76.13 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 764 | 76.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 765 | 76.17 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 820 | 76.21 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 844 | 76.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 886 | 76.27 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 932 | 76.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 948 | 76.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 983 | 76.36 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 19 | 17 |