Os07g0596600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cdc2MsC protein.
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Os07g0596600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cdc2MsC protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.65 | 0.238 | 11.2 | 0.15 | 0.616 | -0.682 | -0.26 | 0.696 | 0.0286 | 18.2 | 23.6 | 94 | -- | -- |
| 25.81 | 0.237 | 11.3 | 0.0432 | 0.598 | -0.608 | -0.172 | -- | -0.000914 | 18.3 | 23.2 | 82 | -- | -- |
| 25.77 | 0.236 | 11.2 | 0.138 | 0.615 | -0.665 | -- | 0.533 | 0.0216 | 18.3 | 23.57 | 90 | -- | -- |
| 25.86 | 0.237 | 11.3 | 0.0513 | 0.596 | -0.613 | -- | -- | 0.00138 | 18.4 | 23.2 | 81 | -- | -- |
| 40.06 | 0.296 | 11.2 | -0.0272 | -- | -0.35 | -- | -0.115 | -0.0467 | -- | 22.23 | 2 | -- | -- |
| 32.14 | 0.266 | 11.3 | -0.0657 | 0.447 | -- | 0.118 | -- | -0.0883 | 20 | -- | -- | -- | -- |
| 32.17 | 0.266 | 11.3 | -0.0685 | 0.449 | -- | -- | -- | -0.0879 | 19.9 | -- | -- | -- | -- |
| 40.02 | 0.295 | 11.2 | -0.00722 | -- | -0.356 | -- | -- | -0.0388 | -- | 21.82 | 2 | -- | -- |
| 25.93 | 0.237 | 11.3 | -- | 0.591 | -0.599 | -- | -- | -0.00675 | 18.4 | 23.22 | 81 | -- | -- |
| 43.13 | 0.307 | 11.3 | -0.0733 | -- | -- | -- | -- | -0.0938 | -- | -- | -- | -- | -- |
| 32.29 | 0.266 | 11.3 | -- | 0.449 | -- | -- | -- | -0.0802 | 19.9 | -- | -- | -- | -- |
| 40.03 | 0.295 | 11.2 | -- | -- | -0.358 | -- | -- | -0.0375 | -- | 21.73 | 2 | -- | -- |
| 43.27 | 0.307 | 11.3 | -- | -- | -- | -- | -- | -0.0857 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.54 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 2 | 23.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 3 | 23.98 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 5 | 24.14 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 7 | 24.24 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 5 |
| 9 | 24.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 13 | 24.50 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 16 | 24.54 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 21 |
| 55 | 24.91 | temperature | 25.0 | 720 | < th | dose independent | rect. | 4 | 9 |
| 71 | 25.04 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 73 | 25.04 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 78 | 25.07 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 18 |
| 79 | 25.07 | temperature | 30.0 | 720 | < th | dose independent | rect. | 4 | 19 |
| 98 | 25.15 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 113 | 25.25 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 127 | 25.30 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 12 |
| 130 | 25.31 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 132 | 25.33 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 133 | 25.33 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 20 |
| 154 | 25.41 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 180 | 25.49 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 210 | 25.59 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 224 | 25.64 | temperature | 25.0 | 720 | < th | dose independent | sin | 3 | NA |
| 230 | 25.65 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 23 |
| 231 | 25.66 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 13 |
| 257 | 25.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 14 |
| 259 | 25.71 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 266 | 25.73 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 269 | 25.73 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 298 | 25.80 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 20 |
| 323 | 25.84 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 351 | 25.87 | radiation | 1.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 372 | 25.90 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 373 | 25.90 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 377 | 25.90 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 382 | 25.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 395 | 25.94 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 403 | 25.95 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 409 | 25.96 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 417 | 25.97 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 418 | 25.97 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 440 | 26.00 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 464 | 26.03 | temperature | 30.0 | 720 | < th | dose independent | sin | 23 | NA |
| 499 | 26.07 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 12 |
| 519 | 26.10 | humidity | 50.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 520 | 26.10 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 527 | 26.11 | temperature | 30.0 | 720 | < th | dose independent | sin | 19 | NA |
| 575 | 26.15 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 625 | 26.21 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 626 | 26.21 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 12 |
| 656 | 26.23 | humidity | 50.0 | 720 | > th | dose independent | rect. | 19 | 22 |
| 669 | 26.24 | humidity | 60.0 | 720 | > th | dose independent | rect. | 11 | 5 |
| 685 | 26.25 | radiation | 1.0 | 720 | < th | dose independent | sin | 22 | NA |
| 696 | 26.26 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 4 |
| 728 | 26.27 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 732 | 26.28 | temperature | 30.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 739 | 26.28 | temperature | 25.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 752 | 26.29 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 753 | 26.29 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 14 | 15 |
| 760 | 26.29 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 762 | 26.29 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 764 | 26.29 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 767 | 26.29 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 771 | 26.30 | temperature | 30.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 774 | 26.30 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 777 | 26.30 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 778 | 26.30 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 781 | 26.30 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 807 | 26.30 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 830 | 26.31 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 831 | 26.31 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 832 | 26.31 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 840 | 26.31 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 841 | 26.31 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 844 | 26.31 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 846 | 26.31 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 876 | 26.31 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 880 | 26.32 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 881 | 26.32 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 920 | 26.32 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 3 | NA |