Os07g0595800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin related, ubiquitously expressed transcript family protein.
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Os07g0595800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin related, ubiquitously expressed transcript family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53 | 0.342 | 10.5 | 0.195 | 0.68 | -0.626 | -0.0424 | -0.0598 | 0.0929 | 18.4 | 67.23 | 1198 | -- | -- |
| 53 | 0.339 | 10.5 | 0.201 | 0.68 | -0.63 | -0.0442 | -- | 0.0939 | 18.4 | 67.25 | 1198 | -- | -- |
| 53 | 0.339 | 10.5 | 0.195 | 0.68 | -0.626 | -- | -0.0605 | 0.0928 | 18.4 | 67.25 | 1198 | -- | -- |
| 53.01 | 0.339 | 10.5 | 0.201 | 0.68 | -0.63 | -- | -- | 0.0939 | 18.4 | 67.34 | 1198 | -- | -- |
| 75.9 | 0.406 | 10.5 | 0.204 | -- | -0.659 | -- | -0.068 | 0.117 | -- | 68.18 | 1250 | -- | -- |
| 67.15 | 0.384 | 10.5 | 0.0818 | 0.703 | -- | 0.0201 | -- | 0.122 | 17.5 | -- | -- | -- | -- |
| 67.15 | 0.384 | 10.5 | 0.0817 | 0.703 | -- | -- | -- | 0.122 | 17.5 | -- | -- | -- | -- |
| 75.74 | 0.405 | 10.5 | 0.195 | -- | -0.651 | -- | -- | 0.0983 | -- | 69 | 1250 | -- | -- |
| 54.05 | 0.342 | 10.5 | -- | 0.677 | -0.603 | -- | -- | 0.0732 | 18.3 | 67.17 | 1198 | -- | -- |
| 92.88 | 0.45 | 10.5 | 0.0584 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 67.32 | 0.384 | 10.5 | -- | 0.702 | -- | -- | -- | 0.112 | 17.5 | -- | -- | -- | -- |
| 76.76 | 0.408 | 10.5 | -- | -- | -0.628 | -- | -- | 0.0891 | -- | 68 | 1250 | -- | -- |
| 92.97 | 0.45 | 10.5 | -- | -- | -- | -- | -- | 0.0979 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.40 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 2 | 53.40 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 5 | 53.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 6 | 53.88 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 9 | 53.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 12 | 54.04 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 14 | 54.16 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 52 | 54.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 61 | 55.14 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 65 | 55.19 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 67 | 55.21 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 71 | 55.33 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 73 | 55.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 80 | 55.40 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 88 | 55.62 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 93 | 55.65 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 108 | 55.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 113 | 55.83 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 121 | 55.90 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 122 | 55.90 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 129 | 55.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 134 | 55.98 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 135 | 55.99 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 150 | 56.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 151 | 56.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 154 | 56.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 156 | 56.11 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 174 | 56.19 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 175 | 56.20 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 180 | 56.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 182 | 56.23 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 186 | 56.24 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 196 | 56.27 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 206 | 56.33 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 210 | 56.34 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 215 | 56.37 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 231 | 56.44 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 259 | 56.50 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 262 | 56.50 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 263 | 56.50 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 288 | 56.53 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 300 | 56.55 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 301 | 56.55 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 302 | 56.55 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 321 | 56.59 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 351 | 56.64 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 352 | 56.64 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 357 | 56.64 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 368 | 56.65 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 372 | 56.65 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 376 | 56.66 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 380 | 56.67 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 384 | 56.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 387 | 56.68 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 390 | 56.68 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 404 | 56.70 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 420 | 56.71 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 421 | 56.71 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 425 | 56.71 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 434 | 56.72 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 454 | 56.72 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 462 | 56.72 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 480 | 56.73 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 501 | 56.76 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 514 | 56.77 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 19 |
| 547 | 56.80 | humidity | 70.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 549 | 56.80 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 5 |
| 552 | 56.80 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 554 | 56.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 597 | 56.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 631 | 56.87 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 632 | 56.87 | wind | 7.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 633 | 56.87 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 698 | 56.88 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 699 | 56.88 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 8 |
| 710 | 56.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 713 | 56.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 716 | 56.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 717 | 56.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 718 | 56.89 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 723 | 56.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 724 | 56.89 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 733 | 56.90 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 735 | 56.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 747 | 56.90 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 748 | 56.90 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 755 | 56.91 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 793 | 56.93 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 816 | 56.94 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 854 | 56.96 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 856 | 56.96 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 857 | 56.96 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 859 | 56.96 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 860 | 56.96 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 863 | 56.96 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 874 | 56.97 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 975 | 57.04 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 24 | 20 |
| 977 | 57.04 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 991 | 57.05 | humidity | 70.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 992 | 57.05 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 995 | 57.05 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 996 | 57.05 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 3 | 17 |