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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0595700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.1 (0.0387) R2 : 0.66
β1 : -1.96 (0.141) R2dD : 0.154 R2D : 0.137
β2 : 1.71 (0.0921) R2dC : 0.269 R2C : 0.31
β3 : -1.49 (0.102) R2dE : 0.172 R2E : 0.21
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.599 (0.0827) R2dN8 : 0.0535 R2N8 : -0.00168
σ : 0.722
deviance : 240.44
__
_____
C
peak time of C : 11.9
E
wheather : temperature
threshold : 14.9
memory length : 78
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.2
open length of G : 20.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.76 0.69 5.1 -2.1 1.75 -1.45 2.06 1.81 -0.63 11.9 14.95 83 8.37 20.1
224.9 0.698 5.09 -2.09 1.74 -1.43 2.17 -- -0.636 11.8 15.1 82 8.42 20.2
233.55 0.712 5.08 -2.12 1.71 -1.44 -- 1.82 -0.602 11.8 14.88 73 8.33 20.3
240.44 0.722 5.1 -1.96 1.71 -1.49 -- -- -0.599 11.9 14.9 78 8.2 20.5
289.55 0.793 5.08 -1.95 -- -1.71 -- -1 -0.508 -- 14.4 620 7.01 20
309.68 0.825 5.06 -2.15 2.06 -- 1.97 -- -0.521 10.4 -- -- -- --
325.32 0.845 5.05 -2.07 2.06 -- -- -- -0.517 10.3 -- -- -- --
296.44 0.802 5.09 -2.05 -- -1.69 -- -- -0.52 -- 14.41 615 6.96 20.1
328.49 0.844 5.01 -- 1.76 -1.59 -- -- -0.331 11.6 17.45 31 8.4 21.1
583.41 1.13 5.11 -2.11 -- -- -- -- -0.523 -- -- -- -- --
438.64 0.98 5 -- 2.07 -- -- -- -0.286 10.4 -- -- -- --
391.89 0.922 5.06 -- -- -1.97 -- -- -0.215 -- 14.47 620 6.38 21.2
700.43 1.24 5.06 -- -- -- -- -- -0.289 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.58 temperature 15.0 90 > th dose independent rect. 8 20
10 226.83 atmosphere 1015.0 30 < th dose independent rect. 8 21
14 228.86 radiation 30.0 90 < th dose dependent rect. 5 3
20 229.75 humidity 60.0 90 > th dose dependent rect. 5 3
25 230.06 atmosphere 1015.0 90 < th dose dependent rect. 5 2
30 230.62 radiation 20.0 90 < th dose independent rect. 5 3
44 232.64 wind 7.0 270 < th dose independent rect. 4 2
45 232.69 precipitation 0.1 270 < th dose independent rect. 6 22
46 232.69 precipitation 0.1 270 < th dose dependent rect. 6 22
48 232.70 temperature 10.0 270 > th dose independent rect. 4 2
50 232.70 temperature 30.0 270 < th dose independent rect. 4 2
51 232.70 humidity 50.0 270 > th dose independent rect. 4 2
54 232.70 atmosphere 995.0 270 > th dose independent rect. 4 2
55 232.70 atmosphere 1015.0 270 < th dose independent rect. 4 2
67 232.94 radiation 1.0 270 > th dose independent rect. 7 9
72 233.14 precipitation 0.1 270 < th dose independent rect. 4 2
73 233.14 precipitation 0.1 270 < th dose dependent rect. 4 2
80 233.67 radiation 1.0 270 < th dose independent rect. 3 16
82 233.75 humidity 70.0 30 > th dose independent rect. 5 3
100 234.97 temperature 10.0 270 > th dose dependent rect. 4 2
102 235.05 wind 9.0 270 < th dose independent rect. 6 22
106 235.30 wind 7.0 30 < th dose independent rect. 5 3
110 235.37 temperature 10.0 30 > th dose independent rect. 5 3
112 235.37 temperature 30.0 30 < th dose independent rect. 5 3
113 235.37 humidity 50.0 30 > th dose independent rect. 5 3
115 235.37 atmosphere 995.0 30 > th dose independent rect. 5 3
116 235.37 atmosphere 1015.0 30 < th dose independent rect. 5 3
121 235.47 radiation 1.0 270 < th dose dependent rect. 3 16
122 235.54 atmosphere 995.0 270 > th dose independent rect. 6 22
123 235.58 precipitation 0.1 30 < th dose independent rect. 5 3
124 235.58 precipitation 0.1 30 < th dose dependent rect. 5 3
133 235.92 wind 9.0 4320 < th dose independent rect. 5 4
134 235.92 radiation 1.0 270 < th dose independent rect. 4 13
135 235.93 wind 9.0 270 < th dose dependent rect. 4 2
137 235.97 atmosphere 995.0 30 > th dose independent rect. 8 21
160 236.18 wind 1.0 90 > th dose independent rect. 4 4
161 236.23 wind 9.0 30 < th dose independent rect. 8 21
162 236.23 precipitation 0.1 30 < th dose independent rect. 8 21
163 236.23 precipitation 0.1 30 < th dose dependent rect. 8 21
170 236.44 temperature 10.0 1440 > th dose independent rect. 5 4
173 236.44 humidity 50.0 1440 > th dose independent rect. 5 4
175 236.44 atmosphere 995.0 1440 > th dose independent rect. 5 4
176 236.44 atmosphere 1015.0 1440 < th dose independent rect. 5 4
177 236.44 temperature 10.0 1440 > th dose independent rect. 9 20
236 237.15 radiation 1.0 270 < th dose dependent rect. 4 13
268 237.59 humidity 70.0 90 > th dose dependent rect. 4 16
274 237.73 wind 1.0 270 > th dose independent rect. 4 1
279 237.86 radiation 1.0 270 < th dose independent rect. 4 11
311 239.14 temperature 10.0 30 > th dose dependent rect. 5 3
325 239.38 temperature 30.0 90 < th dose dependent rect. 5 2
327 239.44 radiation 1.0 270 < th dose dependent rect. 4 11
362 240.20 temperature 10.0 30 > th dose dependent rect. 8 21
379 240.36 radiation 40.0 270 < th dose dependent rect. 15 16
441 240.75 radiation 1.0 270 < th dose independent rect. 4 6
458 240.96 temperature 15.0 270 > th dose independent rect. 7 9
460 240.99 radiation 20.0 270 < th dose independent rect. 16 15
545 241.68 humidity 70.0 30 > th dose dependent rect. 5 9
552 241.76 atmosphere 1015.0 90 < th dose dependent rect. 4 5
556 241.87 radiation 1.0 270 < th dose dependent rect. 4 6
607 242.52 precipitation 0.1 270 < th dose independent rect. 7 9
608 242.52 precipitation 0.1 270 < th dose dependent rect. 7 9
614 242.65 radiation 20.0 90 < th dose dependent rect. 4 20
617 242.68 humidity 80.0 90 > th dose independent rect. 4 7
633 242.76 atmosphere 1015.0 270 < th dose independent rect. 7 9
634 242.76 temperature 10.0 270 > th dose independent rect. 16 15
636 242.78 atmosphere 995.0 270 > th dose independent rect. 7 9
642 242.86 wind 1.0 30 > th dose independent rect. 17 15
648 242.91 wind 9.0 270 < th dose independent rect. 16 15
657 243.05 humidity 50.0 30 > th dose independent rect. 8 21
677 243.51 wind 9.0 270 < th dose independent rect. 7 9
744 244.08 humidity 70.0 90 > th dose dependent rect. 4 19
793 244.90 atmosphere 1010.0 90 < th dose independent rect. 21 8
799 245.02 precipitation 0.1 270 < th dose independent rect. 16 15
801 245.02 precipitation 0.1 270 < th dose dependent rect. 16 15
816 245.26 atmosphere 995.0 30 > th dose dependent rect. 5 3
892 246.07 radiation 1.0 270 < th dose independent sin 1 NA
916 246.49 humidity 80.0 90 > th dose independent rect. 4 10
919 246.55 humidity 80.0 90 > th dose independent rect. 4 16
943 246.96 humidity 50.0 270 > th dose independent rect. 16 15
947 246.98 atmosphere 995.0 270 > th dose dependent rect. 4 2
950 246.99 temperature 30.0 90 < th dose independent rect. 8 20
987 247.53 wind 1.0 270 > th dose independent rect. 7 9
997 247.65 temperature 15.0 90 > th dose independent rect. 21 8