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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0594400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0654) R2 : 0.786
β1 : -2.14 (0.291) R2dD : 0.06 R2D : 0.225
β2 : 0.935 (0.127) R2dC : 0.0257 R2C : 0.0215
β3 : -3.26 (0.258) R2dE : 0.174 R2E : 0.455
β4 : -6.26 (0.491) R2dD*C : 0.0771 R2D*C : 0.0464
β5 : 6.5 (0.864) R2dD*E : 0.0941 R2D*E : 0.356
γ1 : -0.348 (0.137) R2dN8 : 0.00604 R2N8 : 0.0231
σ : 0.994
deviance : 447.23
__
_____
C
peak time of C : 22.4
E
wheather : temperature
threshold : 20.7
memory length : 4471
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
447.23 0.994 3.82 -2.14 0.935 -3.26 -6.26 6.5 -0.348 22.4 20.7 4471 -- --
475.47 1.02 4.02 -1.63 0.862 -5.61 -6.09 -- -0.352 21.7 18.79 11581 -- --
588.58 1.13 3.76 -1.85 1.1 -3.3 -- 6.83 -0.288 0.504 20.7 4479 -- --
612.82 1.15 4 -1.31 1.02 -5.69 -- -- -0.386 0.361 18.6 11660 -- --
663.13 1.2 3.77 -1.77 -- -3.27 -- 6.81 -0.293 -- 20.72 4523 -- --
858.34 1.37 4.37 -6.03 0.89 -- -6.73 -- -1.93 22.1 -- -- -- --
1018.99 1.49 4.36 -5.78 1.06 -- -- -- -1.93 0.365 -- -- -- --
688.8 1.22 4 -1.28 -- -5.77 -- -- -0.398 -- 18.6 11674 -- --
624.84 1.16 3.98 -- 1.12 -5.91 -- -- -0.0884 0.546 18.6 24608 -- --
1089.19 1.54 4.34 -5.75 -- -- -- -- -1.91 -- -- -- -- --
1900.76 2.04 4.22 -- 0.977 -- -- -- -1.28 0.0573 -- -- -- --
690.78 1.22 3.93 -- -- -5.91 -- -- -0.0462 -- 18.1 28967 -- --
1960.88 2.07 4.2 -- -- -- -- -- -1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 424.10 humidity 50 43200 < th dose independent rect. 6 4
2 424.33 humidity 50 43200 < th dose independent sin 10 NA
4 424.54 humidity 50 43200 < th dose independent rect. 21 13
5 424.59 humidity 50 43200 < th dose independent rect. 3 7
13 425.20 humidity 50 43200 < th dose independent rect. 19 15
16 430.59 humidity 50 43200 < th dose independent rect. 17 18
17 431.15 humidity 50 43200 > th dose independent sin 10 NA
18 431.17 humidity 50 43200 > th dose independent rect. 7 3
19 431.53 humidity 50 43200 > th dose independent rect. 17 18
27 434.82 humidity 60 43200 < th dose dependent rect. 17 17
28 434.99 temperature 20 4320 > th dose independent rect. 17 13
29 435.02 humidity 50 43200 > th dose independent rect. 21 13
31 435.20 humidity 50 43200 < th dose independent rect. 15 21
33 435.31 humidity 50 43200 > th dose independent rect. 16 20
34 435.68 temperature 20 4320 < th dose independent rect. 17 13
37 436.13 humidity 50 43200 > th dose independent rect. 1 9
38 436.22 humidity 50 43200 > th dose independent rect. 19 15
48 436.62 humidity 60 43200 < th dose dependent rect. 18 15
66 438.43 humidity 70 43200 > th dose independent rect. 20 1
67 438.54 humidity 70 43200 < th dose independent rect. 17 4
80 440.18 humidity 70 43200 < th dose independent rect. 20 1
81 440.29 humidity 50 43200 < th dose dependent sin 11 NA
103 441.87 temperature 20 4320 > th dose independent sin 13 NA
109 442.22 humidity 70 43200 > th dose independent rect. 17 4
116 442.78 humidity 60 43200 > th dose independent rect. 15 12
119 442.87 temperature 20 4320 < th dose independent sin 12 NA
147 444.11 humidity 80 43200 < th dose dependent rect. 7 2
166 444.92 humidity 60 43200 < th dose independent rect. 15 12
175 445.17 humidity 60 43200 < th dose independent rect. 14 14
182 445.35 humidity 70 43200 < th dose independent rect. 20 3
195 445.63 humidity 60 43200 > th dose independent sin 16 NA
196 445.63 humidity 60 43200 < th dose dependent rect. 7 2
204 445.80 humidity 60 43200 > th dose independent rect. 20 23
223 446.19 humidity 60 43200 > th dose independent rect. 6 22
246 446.41 humidity 60 43200 > th dose independent rect. 24 23
256 446.54 humidity 60 43200 > th dose independent no NA NA
260 446.60 humidity 60 43200 > th dose independent rect. 10 23
263 446.62 humidity 60 43200 > th dose independent rect. 3 23
290 446.81 humidity 50 43200 < th dose dependent rect. 15 20
308 446.96 humidity 60 43200 < th dose independent rect. 20 23
327 447.16 humidity 60 43200 < th dose independent rect. 6 23
334 447.20 humidity 60 43200 < th dose independent sin 16 NA
336 447.20 humidity 60 43200 < th dose independent rect. 12 20
343 447.23 humidity 60 43200 < th dose independent rect. 24 22
367 447.43 humidity 60 43200 < th dose independent no NA NA
390 447.58 humidity 60 43200 < th dose independent rect. 2 23
432 447.86 humidity 70 43200 < th dose dependent rect. 17 1
444 447.97 humidity 80 43200 < th dose dependent rect. 17 3
461 448.12 humidity 60 43200 < th dose independent rect. 24 17
517 448.58 humidity 50 43200 > th dose independent sin 13 NA
529 448.72 humidity 60 43200 > th dose independent sin 3 NA
552 448.87 humidity 70 43200 > th dose independent rect. 20 12
592 449.19 humidity 50 43200 < th dose independent rect. 14 4
600 449.23 humidity 60 43200 < th dose independent sin 4 NA
603 449.25 humidity 70 43200 < th dose independent rect. 20 11
659 449.93 humidity 80 43200 < th dose dependent rect. 16 5
714 450.66 humidity 60 43200 < th dose dependent rect. 22 11
749 451.03 humidity 50 43200 < th dose dependent rect. 20 15
846 452.05 humidity 60 43200 < th dose independent rect. 18 9
933 452.93 temperature 20 4320 < th dose independent rect. 21 14
962 453.21 humidity 50 43200 < th dose independent rect. 15 1