Os07g0593400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MFP1 attachment factor 1 (Fragment).
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Os07g0593400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MFP1 attachment factor 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.36 | 0.207 | 12.8 | 0.899 | 0.422 | 0.81 | 0.338 | -0.39 | 0.223 | 10.6 | 20.6 | 14 | -- | -- |
| 19.47 | 0.206 | 12.8 | 0.963 | 0.423 | 0.795 | 0.251 | -- | 0.239 | 10.6 | 20.59 | 12 | -- | -- |
| 19.72 | 0.207 | 12.8 | 0.953 | 0.423 | 0.809 | -- | -0.123 | 0.234 | 10.6 | 20.57 | 18 | -- | -- |
| 19.72 | 0.207 | 12.8 | 0.978 | 0.425 | 0.794 | -- | -- | 0.243 | 10.6 | 20.6 | 18 | -- | -- |
| 28.95 | 0.252 | 12.8 | 0.892 | -- | 1.05 | -- | -0.211 | 0.193 | -- | 20.57 | 18 | -- | -- |
| 28.75 | 0.251 | 12.7 | 1.13 | 0.634 | -- | 0.339 | -- | 0.377 | 12.2 | -- | -- | -- | -- |
| 29.25 | 0.253 | 12.7 | 1.15 | 0.633 | -- | -- | -- | 0.379 | 12.2 | -- | -- | -- | -- |
| 29 | 0.252 | 12.8 | 0.927 | -- | 1.04 | -- | -- | 0.203 | -- | 20.57 | 18 | -- | -- |
| 41.31 | 0.299 | 12.8 | -- | 0.37 | 1.42 | -- | -- | 0.0806 | 9.39 | 15.09 | 23 | -- | -- |
| 54.43 | 0.345 | 12.8 | 1.12 | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
| 63.83 | 0.374 | 12.8 | -- | 0.617 | -- | -- | -- | 0.251 | 12.1 | -- | -- | -- | -- |
| 48.43 | 0.324 | 12.8 | -- | -- | 1.6 | -- | -- | 0.062 | -- | 10.98 | 3 | -- | -- |
| 87.81 | 0.437 | 12.8 | -- | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 19.01 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 20 |
| 4 | 19.03 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 6 | 19.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 17 | 19.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 23 | 19.42 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 25 | 19.45 | temperature | 10 | 30 | > th | dose dependent | sin | 3 | NA |
| 30 | 19.48 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 54 | 19.64 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 59 | 19.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 67 | 19.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 76 | 19.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 77 | 19.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 96 | 19.85 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 131 | 20.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 136 | 20.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 141 | 20.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 145 | 20.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 146 | 20.10 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 159 | 20.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 160 | 20.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 174 | 20.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 184 | 20.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 196 | 20.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 201 | 20.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 218 | 20.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 229 | 20.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 246 | 20.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 248 | 20.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 258 | 20.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 264 | 20.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 272 | 20.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 292 | 20.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 300 | 20.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 305 | 20.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 308 | 20.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 315 | 20.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 398 | 20.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 436 | 21.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 441 | 21.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 474 | 21.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 535 | 21.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 559 | 21.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 626 | 21.41 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 664 | 21.45 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 19 |
| 667 | 21.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 787 | 21.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 839 | 21.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 842 | 21.64 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 17 |
| 863 | 21.66 | temperature | 25 | 30 | < th | dose independent | sin | 3 | NA |
| 912 | 21.71 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 14 |
| 935 | 21.73 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 20 |
| 965 | 21.76 | temperature | 25 | 10 | > th | dose independent | sin | 2 | NA |
| 969 | 21.77 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 22 |