Os07g0592200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0592200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Peptidase A1, pepsin family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.12 | 0.2 | 11.2 | -0.282 | 0.395 | -0.493 | 0.093 | 0.509 | 0.118 | 1.65 | 19.4 | 1444 | -- | -- |
| 18.5 | 0.2 | 11.2 | -0.211 | 0.375 | -0.565 | 0.13 | -- | 0.128 | 1.74 | 19.4 | 1259 | -- | -- |
| 18.12 | 0.198 | 11.2 | -0.286 | 0.399 | -0.502 | -- | 0.557 | 0.12 | 1.63 | 19.1 | 1489 | -- | -- |
| 18.49 | 0.2 | 11.2 | -0.221 | 0.387 | -0.588 | -- | -- | 0.126 | 1.63 | 19.32 | 1379 | -- | -- |
| 26.1 | 0.238 | 11.2 | -0.272 | -- | -0.537 | -- | 0.314 | 0.118 | -- | 19.6 | 1011 | -- | -- |
| 23.73 | 0.228 | 11.2 | -0.00453 | 0.406 | -- | 0.0722 | -- | 0.23 | 1.69 | -- | -- | -- | -- |
| 23.75 | 0.228 | 11.2 | -0.00686 | 0.406 | -- | -- | -- | 0.229 | 1.7 | -- | -- | -- | -- |
| 26.25 | 0.239 | 11.2 | -0.225 | -- | -0.608 | -- | -- | 0.127 | -- | 19.52 | 1013 | -- | -- |
| 19.56 | 0.206 | 11.2 | -- | 0.386 | -0.475 | -- | -- | 0.171 | 1.67 | 19.3 | 1369 | -- | -- |
| 33.78 | 0.272 | 11.2 | 0.00962 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 23.75 | 0.228 | 11.2 | -- | 0.406 | -- | -- | -- | 0.23 | 1.7 | -- | -- | -- | -- |
| 27.35 | 0.244 | 11.2 | -- | -- | -0.503 | -- | -- | 0.165 | -- | 19.62 | 982 | -- | -- |
| 33.78 | 0.271 | 11.2 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 17.67 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 3 | 17.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 4 | 17.72 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 14 | 17.82 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 20 | 17.87 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 35 | 17.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 44 | 17.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 57 | 17.99 | temperature | 20 | 1440 | < th | dose dependent | sin | 7 | NA |
| 110 | 18.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 117 | 18.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 139 | 18.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 191 | 18.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 202 | 18.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 205 | 18.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 213 | 18.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 216 | 18.27 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 223 | 18.27 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 237 | 18.29 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 258 | 18.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 275 | 18.32 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 276 | 18.32 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 277 | 18.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 285 | 18.32 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 297 | 18.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 298 | 18.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 312 | 18.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 318 | 18.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 357 | 18.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 378 | 18.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 393 | 18.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 422 | 18.40 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 442 | 18.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 461 | 18.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 482 | 18.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 525 | 18.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 547 | 18.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 584 | 18.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 608 | 18.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 632 | 18.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 695 | 18.54 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 716 | 18.55 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 737 | 18.55 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 757 | 18.56 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 825 | 18.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 846 | 18.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 847 | 18.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 848 | 18.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 856 | 18.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 870 | 18.61 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 878 | 18.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 22 |
| 906 | 18.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 934 | 18.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 989 | 18.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 23 |