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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0592100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alcohol dehydrogenase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0395) R2 : 0.128
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.544 (0.0944) R2dC : 0.0636 R2C : 0.042
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.491 (0.0832) R2dN8 : 0.0862 R2N8 : 0.0645
σ : 0.746
deviance : 254.1
__
_____
C
peak time of C : 0.815
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.59 0.715 4.15 -0.684 0.678 -0.953 0.19 -3.84 -0.517 0.214 1.141 14088 -- --
243.59 0.727 4.07 -0.303 0.568 -0.719 -0.0637 -- -0.387 0.253 9.04 12202 -- --
226.37 0.701 4.15 -0.685 0.638 -0.918 -- -3.78 -0.522 0.178 1.11 22702 -- --
235.53 0.715 4.01 0.177 0.562 -0.728 -- -- -0.147 0.517 10.41 21629 -- --
240.46 0.722 4.12 -0.727 -- -0.879 -- -3.75 -0.5 -- 1.469 30691 -- --
253.86 0.747 4.08 -0.0094 0.543 -- -0.241 -- -0.492 0.715 -- -- -- --
254.1 0.746 4.08 -0.00074 0.544 -- -- -- -0.491 0.815 -- -- -- --
251.66 0.739 4 0.261 -- -0.961 -- -- -0.0755 -- 10.08 26336 -- --
236.73 0.717 4.01 -- 0.589 -0.733 -- -- -0.162 0.667 10.36 21630 -- --
272.6 0.771 4.07 0.0191 -- -- -- -- -0.481 -- -- -- -- --
254.1 0.746 4.08 -- 0.544 -- -- -- -0.491 0.815 -- -- -- --
249.36 0.735 4.01 -- -- -0.813 -- -- -0.102 -- 2.633 34947 -- --
272.61 0.771 4.07 -- -- -- -- -- -0.484 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.86 radiation 10.0 43200 > th dose independent rect. 17 13
2 220.22 radiation 10.0 43200 > th dose independent rect. 17 1
14 220.52 atmosphere 1010.0 14400 < th dose independent rect. 10 1
15 220.72 atmosphere 1010.0 14400 > th dose independent rect. 9 2
19 220.99 precipitation 0.1 43200 > th dose independent rect. 23 1
20 220.99 precipitation 0.1 43200 > th dose dependent rect. 23 1
23 221.12 precipitation 0.1 43200 < th dose independent rect. 17 1
24 221.12 precipitation 0.1 43200 < th dose dependent rect. 17 1
25 221.13 radiation 30.0 43200 > th dose independent rect. 15 17
26 221.14 precipitation 0.1 43200 < th dose independent rect. 23 1
27 221.14 precipitation 0.1 43200 < th dose dependent rect. 23 1
31 221.21 atmosphere 1010.0 14400 > th dose independent rect. 24 13
33 221.22 atmosphere 1010.0 14400 > th dose independent rect. 5 8
34 221.22 atmosphere 1010.0 14400 > th dose independent rect. 24 11
41 221.26 atmosphere 1010.0 14400 < th dose independent rect. 8 5
51 221.31 atmosphere 1010.0 14400 < th dose independent rect. 17 1
64 221.34 atmosphere 1010.0 14400 < th dose independent rect. 1 13
66 221.34 atmosphere 1010.0 14400 > th dose independent rect. 18 17
68 221.34 atmosphere 1010.0 14400 < th dose independent rect. 3 18
73 221.35 atmosphere 1010.0 14400 < th dose independent rect. 4 10
83 221.36 atmosphere 1010.0 14400 < th dose independent rect. 5 8
110 221.39 atmosphere 1010.0 14400 < th dose independent rect. 17 18
114 221.39 atmosphere 1010.0 14400 < th dose independent rect. 17 20
122 221.41 atmosphere 1010.0 14400 > th dose independent sin 5 NA
127 221.41 atmosphere 1010.0 14400 > th dose independent rect. 24 21
142 221.44 precipitation 0.1 43200 > th dose independent rect. 17 1
148 221.44 atmosphere 1010.0 14400 < th dose independent rect. 19 18
163 221.46 atmosphere 1010.0 14400 < th dose independent rect. 17 3
195 221.49 atmosphere 1010.0 14400 < th dose independent sin 2 NA
280 221.55 atmosphere 1010.0 14400 < th dose independent rect. 12 23
299 221.57 atmosphere 1010.0 14400 > th dose independent rect. 12 23
314 221.58 atmosphere 1010.0 14400 < th dose independent rect. 3 23
316 221.59 atmosphere 1010.0 14400 < th dose independent no NA NA
333 221.59 atmosphere 1010.0 14400 < th dose independent rect. 8 23
335 221.59 atmosphere 1010.0 14400 < th dose independent rect. 19 23
350 221.61 atmosphere 1010.0 14400 > th dose independent no NA NA
352 221.61 atmosphere 1010.0 14400 > th dose independent rect. 17 4
383 221.62 atmosphere 1010.0 14400 > th dose independent rect. 3 23
389 221.63 radiation 10.0 43200 > th dose independent rect. 15 3
422 221.63 atmosphere 1010.0 14400 > th dose independent rect. 8 23
606 221.77 radiation 10.0 43200 > th dose independent rect. 15 1
713 221.89 atmosphere 1010.0 14400 > th dose independent rect. 2 2
771 221.96 radiation 30.0 43200 > th dose independent rect. 15 2
794 221.96 precipitation 0.1 43200 > th dose dependent rect. 19 1
811 221.99 atmosphere 1010.0 14400 < th dose independent rect. 12 10
845 222.05 atmosphere 1010.0 14400 < th dose independent rect. 12 2
883 222.11 wind 7.0 14400 > th dose independent rect. 15 4
891 222.12 humidity 80.0 43200 > th dose independent rect. 18 1
919 222.17 atmosphere 1010.0 14400 > th dose independent rect. 12 1
920 222.17 humidity 80.0 43200 < th dose independent rect. 16 4