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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0590700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0481) R2 : 0.401
β1 : -1 (0.182) R2dD : 0.0456 R2D : 0.0415
β2 : 0.893 (0.123) R2dC : 0.0692 R2C : 0.0288
β3 : 1.66 (0.173) R2dE : 0.146 R2E : 0.218
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.766 (0.108) R2dN8 : 0.101 R2N8 : 0.115
σ : 0.884
deviance : 360.19
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_____
C
peak time of C : 5.67
E
wheather : temperature
threshold : 20.7
memory length : 992
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.99
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.66 0.88 10.2 -0.704 0.876 1.48 1.4 -1.41 -0.68 5.7 20.9 996 1.74 --
355.38 0.878 10.3 -0.987 0.884 1.65 1.41 -- -0.748 5.5 20.74 989 0.949 --
355.01 0.878 10.2 -0.657 0.896 1.51 -- -1.5 -0.675 5.66 20.79 1016 1.76 --
360.19 0.884 10.3 -1 0.893 1.66 -- -- -0.766 5.67 20.7 992 0.99 --
394.2 0.925 10.2 -0.74 -- 1.47 -- -1.29 -0.692 -- 20.78 917 2.46 --
421.99 0.963 10.3 -1.56 0.892 -- 1.41 -- -1.13 6.56 -- -- -- --
426.03 0.967 10.3 -1.54 0.902 -- -- -- -1.13 7.07 -- -- -- --
398.43 0.93 10.3 -1.03 -- 1.6 -- -- -0.768 -- 20.77 868 1.43 --
383.71 0.912 10.2 -- 0.895 1.98 -- -- -0.624 5.66 20.35 1040 0.927 --
468.94 1.01 10.4 -1.52 -- -- -- -- -1.11 -- -- -- -- --
488.26 1.03 10.3 -- 0.886 -- -- -- -0.956 7.18 -- -- -- --
423.34 0.958 10.2 -- -- 1.89 -- -- -0.591 -- 20.7 925 1.21 --
529.8 1.07 10.3 -- -- -- -- -- -0.943 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 358.88 temperature 20 720 < th dose independent rect. 2 5
6 360.69 temperature 20 720 < th dose independent rect. 5 2
11 361.53 radiation 10 1440 < th dose independent rect. 16 1
25 363.00 temperature 20 720 > th dose independent rect. 5 2
33 363.84 temperature 20 720 < th dose dependent rect. 3 2
37 364.02 temperature 20 720 > th dose independent rect. 1 6
38 364.12 temperature 25 720 < th dose dependent rect. 2 9
39 364.20 temperature 25 720 < th dose dependent rect. 3 7
49 364.76 temperature 20 720 < th dose independent sin 7 NA
60 365.20 temperature 20 270 > th dose dependent rect. 5 9
67 365.35 radiation 1 1440 > th dose dependent rect. 16 1
113 366.72 radiation 20 1440 < th dose dependent rect. 16 1
119 366.88 radiation 40 1440 < th dose dependent rect. 16 1
130 367.16 temperature 25 720 < th dose dependent sin 5 NA
138 367.30 radiation 10 1440 < th dose independent rect. 15 12
141 367.37 radiation 10 1440 < th dose independent rect. 15 10
150 367.55 radiation 10 1440 < th dose independent rect. 15 8
156 367.63 radiation 10 1440 < th dose independent rect. 15 6
185 368.19 humidity 50 1440 < th dose dependent rect. 16 1
193 368.33 humidity 50 1440 < th dose independent rect. 16 1
207 368.83 radiation 1 1440 > th dose dependent rect. 11 1
220 369.18 temperature 20 1440 > th dose independent rect. 21 7
223 369.27 radiation 1 1440 > th dose dependent rect. 16 14
235 369.52 temperature 20 1440 < th dose independent rect. 21 7
250 369.71 temperature 20 720 > th dose independent rect. 3 14
290 370.36 radiation 30 4320 < th dose independent rect. 22 10
293 370.38 radiation 30 4320 < th dose independent rect. 24 8
301 370.47 radiation 20 1440 > th dose dependent rect. 16 16
305 370.52 radiation 30 4320 < th dose independent rect. 6 2
318 370.63 temperature 20 1440 > th dose independent rect. 23 2
322 370.65 radiation 40 1440 > th dose dependent rect. 13 23
383 371.25 radiation 30 4320 < th dose independent rect. 2 6
385 371.25 temperature 25 90 < th dose independent rect. 3 16
400 371.38 radiation 10 1440 < th dose independent sin 15 NA
409 371.43 temperature 25 90 < th dose independent rect. 3 14
410 371.43 radiation 40 1440 > th dose dependent rect. 10 2
449 371.73 radiation 30 4320 > th dose dependent rect. 7 1
479 371.92 radiation 1 1440 > th dose dependent rect. 15 17
493 372.09 radiation 40 1440 < th dose dependent rect. 16 14
521 372.40 temperature 30 720 > th dose dependent rect. 18 1
550 372.53 temperature 15 720 > th dose dependent rect. 4 5
571 372.69 temperature 15 720 > th dose dependent rect. 5 2
575 372.77 radiation 40 1440 < th dose dependent rect. 11 1
576 372.78 radiation 30 1440 < th dose dependent rect. 15 17
587 372.87 radiation 10 1440 < th dose independent rect. 11 7
593 372.89 radiation 40 1440 > th dose dependent rect. 8 4
621 372.98 temperature 20 720 > th dose independent sin 4 NA
629 373.00 radiation 10 1440 < th dose dependent rect. 11 21
638 373.13 temperature 15 10 > th dose dependent rect. 6 22
640 373.15 radiation 40 1440 < th dose independent rect. 11 1
662 373.26 radiation 10 1440 < th dose independent rect. 11 19
671 373.34 temperature 15 720 > th dose dependent rect. 1 7
702 373.60 radiation 10 1440 < th dose independent rect. 11 16
708 373.64 radiation 10 1440 < th dose independent rect. 11 14
726 373.72 radiation 10 1440 < th dose independent rect. 11 12
733 373.75 temperature 10 270 > th dose dependent rect. 5 20
735 373.77 radiation 10 1440 < th dose independent rect. 11 10
755 373.92 radiation 40 1440 < th dose dependent rect. 16 11
765 373.99 wind 1 14400 > th dose independent rect. 1 1
768 374.01 wind 3 1440 < th dose dependent rect. 8 1
770 374.03 humidity 50 1440 > th dose independent rect. 16 1
783 374.08 radiation 40 1440 < th dose dependent rect. 16 9
836 374.32 radiation 1 1440 > th dose dependent rect. 15 21
848 374.41 atmosphere 995 43200 > th dose independent rect. 20 14
876 374.56 atmosphere 995 43200 < th dose independent rect. 21 13
881 374.61 temperature 20 10 > th dose dependent rect. 6 10
893 374.69 radiation 40 1440 < th dose dependent rect. 16 7
897 374.73 wind 1 14400 < th dose dependent rect. 1 1
909 374.79 temperature 10 90 > th dose dependent rect. 5 22
914 374.81 humidity 80 14400 < th dose dependent rect. 6 1
922 374.86 atmosphere 995 43200 > th dose independent sin 8 NA
927 374.88 temperature 30 90 < th dose dependent rect. 3 16
928 374.89 atmosphere 995 43200 < th dose independent sin 8 NA
930 374.90 radiation 40 1440 < th dose dependent rect. 16 5
945 374.95 humidity 60 1440 > th dose independent rect. 15 20
980 375.11 atmosphere 995 43200 < th dose dependent sin 11 NA
983 375.13 wind 1 90 < th dose independent rect. 4 1