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Os07g0590600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.79 (0.0362) R2 : 0.735
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.49 (0.13) R2dC : 0.147 R2C : 0.394
β3 : -2.15 (0.146) R2dE : 0.243 R2E : 0.508
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.736 (0.0765) R2dN8 : 0.0708 R2N8 : 0.0866
σ : 0.676
deviance : 210.85
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C
peak time of C : 17.3
E
wheather : wind
threshold : 5.3
memory length : 217
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.02
open length of G : 3.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.98 0.658 8.77 0.636 1.48 -2.17 -1.42 -0.173 -0.659 17.3 4.739 234 2.98 3.48
195.96 0.652 8.77 0.642 1.49 -2.17 -1.33 -- -0.657 17.3 4.798 231 2.98 3.5
198.78 0.657 8.77 0.684 1.49 -2.15 -- 0.903 -0.656 17.3 4.83 228 2.97 3.55
200.23 0.659 8.77 0.64 1.49 -2.18 -- -- -0.662 17.3 4.898 228 3 3.55
253.41 0.741 8.71 0.62 -- -2.8 -- 0.347 -0.623 -- 15.33 166 2.63 5.08
291.82 0.801 8.84 0.557 2.86 -- -1.2 -- -0.827 17.7 -- -- -- --
295.37 0.805 8.84 0.564 2.85 -- -- -- -0.832 17.7 -- -- -- --
244.93 0.729 8.79 0.672 -- -2.88 -- -- -0.671 -- 5.3 198 2.25 5.04
210.85 0.676 8.79 -- 1.49 -2.15 -- -- -0.736 17.3 5.3 217 3.02 3.7
716.86 1.25 8.8 0.475 -- -- -- -- -0.9 -- -- -- -- --
303.75 0.815 8.86 -- 2.84 -- -- -- -0.895 17.8 -- -- -- --
250.35 0.737 8.76 -- -- -2.99 -- -- -0.731 -- 35.74 311 1.27 5.07
722.8 1.25 8.81 -- -- -- -- -- -0.952 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.02 atmosphere 995.0 270 > th dose dependent rect. 3 3
2 199.65 wind 5.0 270 < th dose independent rect. 3 3
4 200.95 atmosphere 1000.0 90 > th dose dependent rect. 3 5
5 201.29 wind 9.0 270 < th dose independent rect. 6 21
10 202.21 temperature 10.0 90 > th dose dependent rect. 8 19
12 202.66 precipitation 0.1 270 < th dose independent rect. 6 21
13 202.66 precipitation 0.1 270 < th dose dependent rect. 6 21
15 202.77 wind 1.0 270 > th dose independent rect. 2 4
17 202.78 precipitation 0.1 270 < th dose independent rect. 3 3
18 202.78 precipitation 0.1 270 < th dose dependent rect. 3 3
25 204.23 temperature 10.0 270 > th dose independent rect. 3 3
27 204.23 temperature 30.0 270 < th dose independent rect. 3 3
28 204.23 humidity 50.0 270 > th dose independent rect. 3 3
31 204.23 atmosphere 995.0 270 > th dose independent rect. 3 3
32 204.23 atmosphere 1015.0 270 < th dose independent rect. 3 3
33 204.23 radiation 20.0 270 < th dose independent rect. 3 3
36 204.23 temperature 10.0 270 > th dose independent rect. 6 21
37 204.30 radiation 40.0 270 < th dose dependent rect. 3 3
45 205.14 temperature 30.0 270 < th dose dependent rect. 3 2
50 205.42 radiation 10.0 270 < th dose independent rect. 2 5
60 206.27 radiation 20.0 270 < th dose dependent rect. 2 5
61 206.38 wind 7.0 270 < th dose independent rect. 7 19
94 207.50 radiation 1.0 270 < th dose dependent rect. 3 16
99 207.73 radiation 40.0 270 < th dose dependent rect. 15 15
108 208.24 radiation 1.0 270 < th dose independent rect. 3 16
115 208.58 atmosphere 1005.0 270 > th dose independent rect. 3 3
125 209.20 wind 9.0 270 < th dose dependent rect. 3 3
145 209.56 temperature 30.0 90 < th dose dependent rect. 3 6
178 210.74 radiation 20.0 270 < th dose independent rect. 15 15
208 211.71 radiation 1.0 270 < th dose dependent rect. 3 9
216 211.96 temperature 25.0 270 < th dose independent rect. 1 7
235 212.74 radiation 1.0 270 < th dose independent rect. 3 9
277 213.95 wind 9.0 270 < th dose independent rect. 6 10
318 214.76 wind 9.0 90 < th dose dependent rect. 3 5
332 215.07 humidity 50.0 270 > th dose dependent rect. 3 3
342 215.33 atmosphere 995.0 270 > th dose independent rect. 16 14
364 215.58 temperature 30.0 90 < th dose dependent rect. 3 18
377 215.80 wind 9.0 270 < th dose dependent rect. 7 19
378 215.82 radiation 30.0 10 < th dose independent rect. 4 4
380 215.85 atmosphere 995.0 270 > th dose independent rect. 2 18
413 216.09 temperature 10.0 270 > th dose dependent rect. 21 14
415 216.11 precipitation 0.1 270 < th dose independent rect. 6 10
417 216.11 precipitation 0.1 270 < th dose dependent rect. 6 10
421 216.17 wind 7.0 270 < th dose independent rect. 20 6
437 216.40 temperature 15.0 270 > th dose independent rect. 11 10
453 216.63 wind 5.0 270 < th dose independent rect. 21 4
454 216.67 temperature 10.0 270 > th dose independent rect. 6 10
455 216.67 atmosphere 1015.0 270 < th dose independent rect. 6 10
456 216.67 temperature 10.0 270 > th dose independent rect. 16 14
472 216.82 temperature 30.0 270 < th dose independent rect. 2 17
480 216.99 radiation 40.0 90 < th dose dependent rect. 4 18
488 217.13 atmosphere 1005.0 10 > th dose independent rect. 5 3
515 217.52 precipitation 0.1 270 < th dose independent rect. 20 6
516 217.52 precipitation 0.1 270 < th dose dependent rect. 20 6
538 218.05 humidity 50.0 270 > th dose independent rect. 21 14
539 218.06 wind 7.0 270 < th dose independent rect. 21 14
570 218.40 radiation 1.0 270 < th dose dependent rect. 20 6
571 218.40 temperature 30.0 90 < th dose dependent rect. 3 8
572 218.41 temperature 10.0 270 > th dose independent rect. 20 6
573 218.41 temperature 30.0 270 < th dose independent rect. 20 6
574 218.41 humidity 50.0 270 > th dose independent rect. 20 6
577 218.41 atmosphere 995.0 270 > th dose independent rect. 20 6
578 218.41 radiation 1.0 270 < th dose independent rect. 20 6
583 218.41 temperature 10.0 270 > th dose independent rect. 2 18
584 218.41 atmosphere 1015.0 270 < th dose independent rect. 2 18
589 218.44 temperature 10.0 270 > th dose dependent rect. 3 3
592 218.48 wind 9.0 270 < th dose dependent rect. 19 7
609 218.82 wind 9.0 270 < th dose independent rect. 16 14
612 218.87 atmosphere 995.0 270 > th dose independent rect. 1 20
614 218.88 humidity 50.0 270 > th dose independent rect. 15 15
618 218.94 wind 9.0 270 < th dose dependent rect. 21 4
632 219.06 atmosphere 1015.0 270 < th dose independent rect. 11 10
633 219.06 temperature 10.0 270 > th dose independent rect. 21 14
634 219.06 atmosphere 995.0 270 > th dose independent rect. 21 14
660 219.41 wind 1.0 270 > th dose independent rect. 7 19
725 219.94 precipitation 0.1 270 < th dose independent rect. 2 18
726 219.94 radiation 20.0 90 < th dose independent rect. 3 19
727 219.94 precipitation 0.1 270 < th dose dependent rect. 2 18
742 220.08 precipitation 0.1 270 < th dose independent rect. 21 4
743 220.08 precipitation 0.1 270 < th dose dependent rect. 21 4
755 220.25 radiation 40.0 10 < th dose dependent rect. 5 18
775 220.43 humidity 50.0 270 > th dose independent rect. 2 17
778 220.45 atmosphere 1015.0 270 < th dose independent rect. 1 20
798 220.61 wind 1.0 270 > th dose independent rect. 2 18
808 220.70 temperature 10.0 270 > th dose independent rect. 21 4
809 220.70 temperature 30.0 270 < th dose independent rect. 21 4
810 220.70 humidity 50.0 270 > th dose independent rect. 21 4
813 220.70 atmosphere 995.0 270 > th dose independent rect. 21 4
814 220.70 radiation 1.0 270 < th dose independent rect. 21 4
820 220.70 temperature 10.0 270 > th dose independent rect. 1 20
821 220.70 radiation 1.0 270 < th dose dependent rect. 21 4
830 220.76 temperature 30.0 10 < th dose dependent rect. 4 18
862 221.09 precipitation 0.1 270 < th dose independent rect. 21 14
863 221.09 precipitation 0.1 270 < th dose dependent rect. 21 14
889 221.39 precipitation 0.1 270 < th dose independent rect. 16 14
891 221.39 precipitation 0.1 270 < th dose dependent rect. 16 14
900 221.45 atmosphere 995.0 270 > th dose independent rect. 11 10
961 221.85 humidity 50.0 270 > th dose dependent rect. 21 4
963 221.86 wind 9.0 270 < th dose independent rect. 2 18
967 221.91 atmosphere 995.0 270 > th dose independent rect. 6 9
997 222.15 atmosphere 995.0 90 > th dose independent rect. 8 19