Os07g0590000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0590000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.03 | 0.583 | 4.14 | 0.767 | 0.378 | 1.51 | 0.0337 | 1.38 | -0.0723 | 13.9 | 24.03 | 797 | -- | -- |
| 156.19 | 0.582 | 4.11 | 0.976 | 0.367 | 1.34 | 0.299 | -- | -0.0128 | 13.4 | 24.73 | 832 | -- | -- |
| 154.02 | 0.578 | 4.15 | 0.765 | 0.378 | 1.52 | -- | 1.42 | -0.074 | 13.9 | 23.95 | 801 | -- | -- |
| 156.47 | 0.583 | 4.11 | 0.991 | 0.365 | 1.33 | -- | -- | -0.0196 | 13.8 | 24.78 | 799 | -- | -- |
| 161.61 | 0.592 | 4.14 | 0.772 | -- | 1.61 | -- | 1.42 | -0.0418 | -- | 24.84 | 864 | -- | -- |
| 181.54 | 0.632 | 4.17 | 0.598 | 0.515 | -- | 0.323 | -- | -0.29 | 12.7 | -- | -- | -- | -- |
| 181.95 | 0.632 | 4.17 | 0.611 | 0.515 | -- | -- | -- | -0.288 | 12.9 | -- | -- | -- | -- |
| 164.17 | 0.597 | 4.11 | 1.02 | -- | 1.48 | -- | -- | 0.0142 | -- | 25 | 870 | -- | -- |
| 178.73 | 0.623 | 4.15 | -- | 0.422 | 0.876 | -- | -- | -0.196 | 13.5 | 24.7 | 761 | -- | -- |
| 198.51 | 0.658 | 4.18 | 0.592 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 191.78 | 0.648 | 4.19 | -- | 0.506 | -- | -- | -- | -0.356 | 12.9 | -- | -- | -- | -- |
| 188.16 | 0.639 | 4.15 | -- | -- | 1.04 | -- | -- | -0.176 | -- | 25.1 | 845 | -- | -- |
| 207.74 | 0.673 | 4.19 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 145.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 146.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 146.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 5 | 146.14 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 8 | 146.98 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 11 | 147.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 12 | 147.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 13 | 147.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 18 | 147.89 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 22 | 148.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 23 | 148.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 25 | 148.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 26 | 148.42 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 28 | 148.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 46 | 149.20 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 49 | 149.40 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 51 | 149.60 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 57 | 150.49 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 58 | 150.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 64 | 150.65 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 71 | 150.92 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 87 | 151.21 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 94 | 151.44 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 95 | 151.44 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 98 | 151.52 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 111 | 152.04 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 112 | 152.16 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 113 | 152.18 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 119 | 152.35 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 126 | 152.59 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 127 | 152.60 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 128 | 152.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 133 | 152.73 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 135 | 152.76 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 138 | 152.86 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 142 | 152.91 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 156 | 153.25 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 174 | 153.51 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 175 | 153.53 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 193 | 153.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 204 | 153.88 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 207 | 153.91 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 218 | 153.97 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 226 | 154.03 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 228 | 154.04 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 230 | 154.06 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 236 | 154.09 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 253 | 154.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 254 | 154.24 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 264 | 154.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 268 | 154.33 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 272 | 154.35 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 273 | 154.36 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 281 | 154.40 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 298 | 154.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 328 | 154.61 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 357 | 154.70 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 372 | 154.78 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 379 | 154.82 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 397 | 154.97 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 398 | 154.98 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 411 | 155.03 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 421 | 155.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 427 | 155.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 430 | 155.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 438 | 155.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 440 | 155.14 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 448 | 155.17 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 22 |
| 454 | 155.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 13 |
| 458 | 155.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 490 | 155.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 494 | 155.34 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 527 | 155.45 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 532 | 155.46 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 535 | 155.47 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 546 | 155.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 548 | 155.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 590 | 155.68 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 596 | 155.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 610 | 155.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 614 | 155.78 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 682 | 155.98 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 685 | 155.99 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 706 | 156.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 710 | 156.06 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 713 | 156.07 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 716 | 156.07 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 734 | 156.11 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 902 | 156.34 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 908 | 156.35 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 915 | 156.39 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 935 | 156.43 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 12 |