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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0589200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0366) R2 : 0.18
β1 : -0.893 (0.134) R2dD : 0.0831 R2D : 0.0669
β2 : 0.612 (0.0867) R2dC : 0.0897 R2C : 0.0871
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.253 (0.078) R2dN8 : 0.0254 R2N8 : 0.00473
σ : 0.687
deviance : 215.46
__
_____
C
peak time of C : 11.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.09 0.666 3.41 -0.802 0.443 1.01 -0.0385 -1.14 -0.217 11.2 44.58 36 -- --
201.93 0.662 3.41 -0.821 0.446 1.17 -0.244 -- -0.219 11.3 45.46 26 -- --
201.09 0.66 3.41 -0.802 0.444 1.01 -- -1.16 -0.218 11.2 44.58 35 -- --
202.21 0.662 3.42 -0.832 0.444 1.18 -- -- -0.232 11.2 45.5 26 -- --
210.65 0.676 3.42 -0.782 -- 1.29 -- -0.967 -0.21 -- 37.11 30 -- --
214.62 0.687 3.42 -0.874 0.609 -- -0.449 -- -0.251 11.7 -- -- -- --
215.46 0.687 3.42 -0.893 0.612 -- -- -- -0.253 11.5 -- -- -- --
212.06 0.678 3.43 -0.845 -- 1.32 -- -- -0.238 -- 37.1 30 -- --
219.45 0.69 3.4 -- 0.428 1.33 -- -- -0.125 11.2 46.52 45 -- --
238.94 0.722 3.44 -0.91 -- -- -- -- -0.26 -- -- -- -- --
236.48 0.719 3.4 -- 0.622 -- -- -- -0.154 11.6 -- -- -- --
229.12 0.705 3.4 -- -- 1.68 -- -- -0.124 -- 45.12 46 -- --
260.77 0.754 3.41 -- -- -- -- -- -0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.42 radiation 40.0 30 < th dose independent rect. 3 17
5 194.47 temperature 30.0 90 < th dose independent rect. 9 5
7 194.71 humidity 90.0 10 < th dose independent rect. 9 5
8 194.81 temperature 15.0 270 > th dose independent rect. 8 4
9 194.82 temperature 15.0 270 > th dose independent rect. 9 2
10 194.87 atmosphere 1000.0 30 > th dose independent rect. 9 18
16 195.48 radiation 1.0 270 > th dose independent rect. 9 1
17 195.62 radiation 1.0 10 > th dose dependent rect. 11 3
19 195.68 temperature 30.0 270 < th dose independent rect. 9 1
22 195.70 atmosphere 995.0 30 > th dose dependent rect. 9 5
25 195.83 atmosphere 995.0 30 > th dose dependent rect. 9 18
28 195.94 wind 9.0 10 < th dose independent rect. 9 5
30 195.98 radiation 20.0 10 > th dose independent rect. 11 2
31 196.02 atmosphere 1000.0 10 > th dose independent rect. 9 5
33 196.04 radiation 1.0 270 > th dose independent rect. 8 4
40 196.17 humidity 90.0 270 < th dose independent rect. 8 4
42 196.20 radiation 40.0 30 < th dose independent rect. 14 19
44 196.22 atmosphere 995.0 270 > th dose dependent rect. 9 1
47 196.25 wind 9.0 10 < th dose independent rect. 14 19
59 196.49 temperature 30.0 30 < th dose independent rect. 9 18
62 196.60 atmosphere 1000.0 270 > th dose independent rect. 9 1
63 196.61 humidity 50.0 10 > th dose independent rect. 14 19
66 196.63 wind 1.0 90 < th dose dependent rect. 8 1
69 196.65 humidity 90.0 270 < th dose independent rect. 9 1
75 196.81 wind 7.0 270 < th dose independent rect. 8 4
79 196.84 wind 1.0 30 > th dose independent rect. 14 19
82 196.95 atmosphere 1015.0 10 < th dose independent rect. 14 19
89 197.00 radiation 40.0 30 < th dose independent rect. 3 14
93 197.05 atmosphere 1015.0 90 < th dose dependent rect. 3 6
95 197.08 precipitation 0.1 30 < th dose independent rect. 14 19
96 197.08 precipitation 0.1 30 < th dose dependent rect. 14 19
97 197.10 temperature 10.0 10 > th dose independent rect. 9 5
100 197.10 atmosphere 1015.0 10 < th dose independent rect. 9 5
101 197.10 precipitation 0.1 10 < th dose independent rect. 9 5
103 197.10 temperature 10.0 10 > th dose independent rect. 14 19
104 197.10 precipitation 0.1 10 < th dose dependent rect. 9 5
105 197.12 wind 7.0 270 < th dose independent rect. 9 1
106 197.12 precipitation 0.1 270 < th dose independent rect. 10 23
107 197.12 precipitation 0.1 270 < th dose dependent rect. 10 23
115 197.17 radiation 40.0 30 < th dose independent rect. 3 6
116 197.21 temperature 10.0 1440 > th dose independent rect. 10 5
119 197.21 temperature 10.0 1440 > th dose independent rect. 15 19
124 197.27 radiation 40.0 30 < th dose independent rect. 3 23
127 197.30 atmosphere 1010.0 30 < th dose independent rect. 3 6
135 197.37 wind 9.0 30 < th dose independent rect. 3 6
136 197.37 temperature 10.0 30 > th dose independent rect. 3 6
139 197.37 temperature 30.0 30 < th dose independent rect. 3 6
140 197.37 humidity 50.0 30 > th dose independent rect. 3 6
142 197.37 atmosphere 995.0 30 > th dose independent rect. 3 6
144 197.37 atmosphere 1010.0 30 < th dose independent rect. 3 8
145 197.37 temperature 10.0 30 > th dose independent rect. 9 18
149 197.40 atmosphere 1000.0 30 > th dose independent rect. 11 16
150 197.41 humidity 90.0 10 < th dose independent rect. 11 3
163 197.50 wind 9.0 30 < th dose independent rect. 9 18
165 197.51 precipitation 0.1 30 < th dose independent rect. 3 6
167 197.51 precipitation 0.1 30 < th dose dependent rect. 3 6
175 197.59 wind 1.0 10 > th dose independent rect. 9 5
178 197.60 precipitation 0.1 270 < th dose independent rect. 12 20
179 197.60 precipitation 0.1 270 < th dose dependent rect. 12 20
191 197.62 precipitation 0.1 30 < th dose independent rect. 9 18
193 197.62 precipitation 0.1 30 < th dose dependent rect. 9 18
194 197.64 radiation 1.0 10 > th dose independent rect. 9 5
197 197.66 precipitation 0.1 270 < th dose independent rect. 9 1
200 197.66 precipitation 0.1 270 < th dose dependent rect. 9 1
216 197.76 atmosphere 995.0 10 > th dose independent rect. 14 19
217 197.77 radiation 30.0 270 < th dose independent rect. 24 8
218 197.77 atmosphere 1000.0 270 > th dose independent rect. 8 16
228 197.81 atmosphere 1015.0 270 < th dose dependent rect. 24 8
230 197.82 wind 1.0 90 < th dose independent rect. 8 1
241 197.90 atmosphere 1015.0 30 < th dose dependent rect. 3 8
250 197.95 atmosphere 1015.0 270 < th dose independent rect. 9 1
255 197.95 temperature 10.0 270 > th dose independent rect. 10 23
259 197.97 humidity 50.0 270 > th dose independent rect. 9 1
260 197.97 atmosphere 1015.0 270 < th dose independent rect. 12 20
266 197.99 wind 9.0 270 < th dose independent rect. 12 20
267 197.99 temperature 10.0 270 > th dose independent rect. 12 20
276 198.04 radiation 1.0 270 > th dose dependent rect. 9 3
286 198.10 atmosphere 995.0 10 > th dose dependent rect. 21 17
291 198.11 atmosphere 995.0 30 > th dose dependent rect. 11 16
293 198.14 humidity 50.0 90 > th dose independent rect. 9 5
320 198.26 temperature 10.0 30 > th dose dependent rect. 3 6
328 198.31 humidity 90.0 270 < th dose independent rect. 3 10
337 198.35 radiation 40.0 270 < th dose independent rect. 11 21
343 198.37 humidity 50.0 30 > th dose dependent rect. 3 6
350 198.41 humidity 50.0 270 > th dose dependent rect. 24 8
367 198.47 humidity 90.0 270 > th dose independent rect. 3 7
379 198.53 radiation 30.0 10 < th dose independent rect. 3 9
382 198.54 humidity 90.0 270 > th dose independent rect. 24 19
387 198.56 temperature 30.0 30 < th dose independent rect. 11 16
406 198.64 humidity 50.0 270 > th dose independent rect. 12 20
411 198.67 radiation 40.0 30 < th dose independent rect. 3 20
412 198.68 humidity 90.0 270 > th dose independent rect. 3 16
419 198.71 wind 9.0 270 < th dose independent rect. 8 16
424 198.74 wind 1.0 270 > th dose independent rect. 9 2
426 198.74 humidity 70.0 270 > th dose independent rect. 24 8
438 198.80 humidity 50.0 1440 > th dose independent rect. 4 6
440 198.81 atmosphere 1015.0 270 < th dose independent rect. 24 8
442 198.82 temperature 10.0 270 > th dose independent rect. 24 8
444 198.82 temperature 30.0 270 < th dose independent rect. 24 8
445 198.82 humidity 50.0 270 > th dose independent rect. 24 8
447 198.82 atmosphere 995.0 270 > th dose independent rect. 24 8
449 198.82 temperature 10.0 270 > th dose independent rect. 8 16
453 198.82 wind 9.0 30 < th dose dependent rect. 3 6
455 198.83 wind 9.0 270 < th dose independent rect. 24 8
461 198.85 temperature 10.0 1440 > th dose independent rect. 4 6
464 198.85 atmosphere 995.0 1440 > th dose independent rect. 4 6
465 198.85 atmosphere 1015.0 1440 < th dose independent rect. 4 6
466 198.85 temperature 10.0 1440 > th dose independent rect. 10 18
472 198.88 humidity 90.0 270 > th dose independent rect. 24 10
476 198.90 atmosphere 995.0 270 > th dose independent rect. 12 20
484 198.92 precipitation 0.1 270 < th dose independent rect. 24 8
490 198.92 precipitation 0.1 270 < th dose dependent rect. 24 8
492 198.95 radiation 40.0 30 < th dose independent rect. 6 15
493 198.95 wind 9.0 10 < th dose independent rect. 11 16
496 198.95 atmosphere 1015.0 90 < th dose dependent rect. 14 19
510 199.00 wind 9.0 270 < th dose dependent rect. 9 1
519 199.04 atmosphere 1015.0 10 < th dose dependent rect. 14 19
526 199.07 humidity 60.0 30 > th dose independent rect. 3 8
533 199.09 temperature 15.0 90 > th dose independent rect. 11 2
540 199.11 precipitation 0.1 270 < th dose independent rect. 8 16
541 199.11 precipitation 0.1 270 < th dose dependent rect. 8 16
543 199.12 temperature 10.0 30 > th dose independent rect. 3 8
546 199.12 atmosphere 995.0 30 > th dose independent rect. 3 8
548 199.12 temperature 10.0 30 > th dose independent rect. 11 16
553 199.14 wind 9.0 30 < th dose independent rect. 3 8
558 199.15 humidity 50.0 10 > th dose independent rect. 3 17
564 199.17 wind 9.0 270 < th dose dependent rect. 8 4
602 199.25 humidity 50.0 10 > th dose dependent rect. 3 17
603 199.26 radiation 1.0 270 > th dose independent rect. 5 8
621 199.28 precipitation 0.1 10 < th dose independent rect. 11 16
622 199.28 precipitation 0.1 10 < th dose dependent rect. 11 16
625 199.30 precipitation 0.1 30 < th dose independent rect. 3 8
628 199.30 precipitation 0.1 30 < th dose dependent rect. 3 8
657 199.38 temperature 30.0 270 < th dose independent rect. 21 15
670 199.43 radiation 1.0 270 < th dose independent rect. 3 14
698 199.49 radiation 1.0 10 > th dose dependent rect. 17 21
700 199.50 humidity 50.0 90 > th dose independent rect. 9 18
704 199.52 humidity 80.0 270 > th dose dependent rect. 3 15
711 199.55 radiation 40.0 30 < th dose dependent rect. 3 6
737 199.60 radiation 1.0 10 > th dose dependent rect. 5 9
759 199.63 radiation 1.0 10 > th dose dependent rect. 10 20
808 199.72 radiation 1.0 270 > th dose dependent rect. 5 8
818 199.73 atmosphere 995.0 90 > th dose dependent rect. 23 14
890 199.79 radiation 10.0 1440 < th dose dependent rect. 15 15
918 199.82 temperature 30.0 30 < th dose independent rect. 11 3
942 199.83 radiation 40.0 10 < th dose dependent rect. 3 9
953 199.85 radiation 10.0 10 > th dose dependent rect. 10 8
971 199.86 radiation 20.0 270 < th dose independent rect. 3 14
997 199.88 atmosphere 995.0 270 > th dose independent rect. 11 22