Os07g0588800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0588800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.82 | 0.539 | 9.06 | 2.55 | 3.8 | 2.86 | 1.27 | 1.12 | 0.426 | 18.8 | 20.85 | 94 | 0.117 | -- |
| 132.77 | 0.537 | 9.07 | 2.46 | 3.79 | 2.86 | 1.14 | -- | 0.381 | 18.7 | 21.1 | 91 | 0.285 | -- |
| 135.16 | 0.541 | 9.06 | 2.43 | 3.76 | 2.86 | -- | 0.268 | 0.399 | 18.8 | 21.17 | 79 | 0.0702 | -- |
| 135.13 | 0.541 | 9.07 | 2.4 | 3.77 | 2.89 | -- | -- | 0.39 | 18.9 | 21.08 | 83 | 2.46e-06 | -- |
| 366.5 | 0.892 | 8.98 | 2.15 | -- | 2.85 | -- | -0.0965 | 0.367 | -- | 24.08 | 785 | 8.98e-05 | -- |
| 233.8 | 0.717 | 8.93 | 2.84 | 2.72 | -- | 1.07 | -- | 0.837 | 17.9 | -- | -- | -- | -- |
| 236.59 | 0.72 | 8.93 | 2.83 | 2.73 | -- | -- | -- | 0.841 | 17.9 | -- | -- | -- | -- |
| 366.63 | 0.892 | 8.98 | 2.11 | -- | 2.83 | -- | -- | 0.367 | -- | 24.11 | 786 | 1.67e-06 | -- |
| 279.72 | 0.779 | 9.14 | -- | 4.12 | 3.52 | -- | -- | 0.0704 | 18.9 | 20.49 | 90 | 0.155 | -- |
| 622.62 | 1.17 | 8.88 | 2.75 | -- | -- | -- | -- | 0.778 | -- | -- | -- | -- | -- |
| 447.46 | 0.99 | 9 | -- | 2.69 | -- | -- | -- | 0.526 | 18 | -- | -- | -- | -- |
| 474.61 | 1.01 | 9.08 | -- | -- | 3.26 | -- | -- | -0.0577 | -- | 23.07 | 833 | 2.34e-07 | -- |
| 821.73 | 1.34 | 8.95 | -- | -- | -- | -- | -- | 0.473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.32 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 11 | 136.10 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 19 | 136.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 30 | 139.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 64 | 143.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 71 | 145.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 156 | 153.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 166 | 153.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 203 | 155.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 219 | 156.21 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 302 | 158.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 368 | 161.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 371 | 161.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 372 | 161.20 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 397 | 161.60 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 415 | 162.07 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 421 | 162.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 431 | 162.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 447 | 162.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 492 | 163.67 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 12 |
| 529 | 164.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 533 | 164.39 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 11 |
| 539 | 164.49 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 9 |
| 547 | 164.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 549 | 164.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 584 | 165.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 592 | 165.47 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 12 |
| 597 | 165.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 627 | 165.98 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 6 |
| 639 | 166.11 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 648 | 166.20 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 14 |
| 657 | 166.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 665 | 166.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 699 | 166.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 741 | 167.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 761 | 167.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 779 | 167.69 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 861 | 168.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 893 | 168.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 933 | 169.10 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 956 | 169.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |