Os07g0586900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os07g0586900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.35 | 0.678 | 6.59 | 0.81 | 1.59 | 0.495 | 2.47 | -4.26 | -0.231 | 5.88 | 20.6 | 729 | 2.32 | -- |
| 234.8 | 0.714 | 6.68 | 0.156 | 1.58 | 1.51 | 1.95 | -- | -0.361 | 5.48 | 18.7 | 778 | 2.18 | -- |
| 213.55 | 0.681 | 6.56 | 1.01 | 1.7 | 0.44 | -- | -4.2 | -0.185 | 5.91 | 20.6 | 1056 | 2.22 | -- |
| 241.95 | 0.724 | 6.68 | 0.303 | 1.61 | 1.67 | -- | -- | -0.381 | 5.5 | 18.67 | 765 | 0.775 | -- |
| 353.35 | 0.875 | 6.64 | 0.809 | -- | 0.737 | -- | -3.51 | -0.181 | -- | 20.7 | 728 | 2.84 | -- |
| 265.86 | 0.764 | 6.71 | -0.182 | 1.64 | -- | 1.28 | -- | -0.556 | 6.04 | -- | -- | -- | -- |
| 269.33 | 0.769 | 6.71 | -0.167 | 1.65 | -- | -- | -- | -0.56 | 6.25 | -- | -- | -- | -- |
| 263.51 | 0.756 | 6.74 | -0.0965 | -- | 1.53 | -- | -- | -0.4 | -- | 28.34 | 378 | 2.8 | -- |
| 241.82 | 0.724 | 6.69 | -- | 1.62 | 1.55 | -- | -- | -0.424 | 5.75 | 18.64 | 745 | 0.0135 | -- |
| 411.02 | 0.947 | 6.74 | -0.122 | -- | -- | -- | -- | -0.524 | -- | -- | -- | -- | -- |
| 270.07 | 0.769 | 6.71 | -- | 1.65 | -- | -- | -- | -0.541 | 6.26 | -- | -- | -- | -- |
| 256.61 | 0.746 | 6.74 | -- | -- | 1.65 | -- | -- | -0.485 | -- | 28.5 | 261 | 1.23 | -- |
| 411.41 | 0.947 | 6.74 | -- | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.57 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 3 | 209.80 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 4 | 209.86 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 5 | 209.92 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 14 | 211.21 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 29 | 212.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 40 | 212.97 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 46 | 213.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 65 | 214.01 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 69 | 214.06 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 90 | 214.67 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 158 | 216.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 173 | 216.80 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 189 | 216.98 | humidity | 70 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 308 | 218.78 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 336 | 219.13 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 341 | 219.20 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 412 | 220.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 21 |
| 423 | 220.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 439 | 220.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 463 | 220.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 464 | 220.82 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 465 | 220.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 479 | 220.93 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 483 | 220.99 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 491 | 221.14 | radiation | 10 | 10 | < th | dose independent | rect. | 21 | 21 |
| 493 | 221.17 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 497 | 221.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 524 | 221.39 | humidity | 80 | 14400 | > th | dose dependent | sin | 10 | NA |
| 542 | 221.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 588 | 221.95 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 596 | 222.03 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 612 | 222.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 616 | 222.31 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 649 | 222.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 661 | 222.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 714 | 223.20 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 744 | 223.42 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 749 | 223.46 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 774 | 223.66 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 20 |
| 839 | 224.12 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 844 | 224.17 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 853 | 224.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 875 | 224.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 882 | 224.37 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 888 | 224.43 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 907 | 224.60 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 929 | 224.72 | radiation | 30 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 969 | 224.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 984 | 225.01 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |