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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0586800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0552) R2 : 0.451
β1 : 3.2 (0.215) R2dD : 0.32 R2D : 0.122
β2 : 0.957 (0.142) R2dC : 0.0551 R2C : 0.0339
β3 : -2.78 (0.339) R2dE : 0.0881 R2E : -0.0263
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.2 (1.32) R2dD*E : 0.162 R2D*E : -0.00973
γ1 : -0.574 (0.12) R2dN8 : 0.0392 R2N8 : 0.0407
σ : 1.02
deviance : 479.86
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_____
C
peak time of C : 17
E
wheather : precipitation
threshold : 0.08025
memory length : 4794
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.8
open length of G : 20.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
477.41 1.03 4.72 3.2 0.961 -2.81 -0.987 -14.3 -0.572 17 0.08171 4795 20.8 20.3
556.44 1.1 4.66 2.89 0.909 -2.71 -0.76 -- -0.638 17.1 0.3797 2127 21.9 21.5
479.86 1.02 4.72 3.2 0.957 -2.78 -- -14.2 -0.574 17 0.08025 4794 20.8 20.3
554.58 1.1 4.66 2.91 0.978 -2.83 -- -- -0.647 17.2 0.4447 2111 23.8 21.7
527.9 1.07 4.71 3.2 -- -2.72 -- -14.4 -0.59 -- 0.06931 4844 20.9 20.3
655.93 1.2 4.61 2.22 0.988 -- -0.638 -- -0.444 17 -- -- -- --
656.95 1.2 4.62 2.22 0.985 -- -- -- -0.447 17.1 -- -- -- --
603.13 1.14 4.66 2.95 -- -2.8 -- -- -0.647 -- 0.4998 2126 23.7 22.9
599.99 1.14 4.75 -- 1.14 -2.35 -- -- -0.923 15.7 0.4685 15644 1.32 18.2
707.81 1.24 4.6 2.18 -- -- -- -- -0.472 -- -- -- -- --
786.3 1.31 4.67 -- 0.946 -- -- -- -0.694 17.2 -- -- -- --
602.01 1.14 4.76 -- -- -2.31 -- -- -1.03 -- 0.4432 15672 3.17 13.7
833.18 1.35 4.66 -- -- -- -- -- -0.714 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 451.77 wind 3.0 43200 > th dose dependent rect. 6 1
3 453.97 wind 3.0 43200 > th dose independent rect. 6 2
4 454.14 wind 3.0 43200 < th dose independent rect. 6 3
7 454.87 humidity 80.0 14400 > th dose independent rect. 13 6
8 454.99 wind 3.0 43200 > th dose independent rect. 4 3
10 455.11 wind 3.0 43200 < th dose independent rect. 4 6
12 455.50 humidity 80.0 14400 > th dose independent rect. 14 4
15 455.67 wind 3.0 43200 > th dose independent rect. 4 6
25 456.94 wind 9.0 14400 > th dose dependent rect. 6 5
28 457.28 wind 9.0 43200 < th dose dependent rect. 6 1
33 457.78 humidity 80.0 14400 < th dose independent rect. 13 6
37 458.44 humidity 80.0 14400 < th dose independent rect. 14 4
40 458.74 wind 3.0 14400 < th dose dependent rect. 3 2
45 459.18 humidity 80.0 14400 < th dose independent rect. 16 1
58 460.41 humidity 60.0 14400 > th dose dependent rect. 14 1
70 461.45 humidity 60.0 14400 > th dose dependent rect. 13 5
80 462.12 wind 9.0 14400 > th dose dependent rect. 10 1
103 463.51 humidity 90.0 14400 < th dose dependent rect. 14 5
261 468.94 wind 5.0 43200 < th dose dependent rect. 5 5
285 469.69 humidity 80.0 14400 > th dose independent rect. 14 1
359 471.34 wind 9.0 14400 < th dose independent rect. 7 4
366 471.57 wind 1.0 14400 > th dose dependent rect. 3 1
404 472.43 wind 5.0 43200 < th dose dependent rect. 3 9
448 473.31 humidity 70.0 14400 < th dose independent rect. 15 17
455 473.43 humidity 60.0 14400 > th dose independent rect. 12 4
510 474.04 wind 3.0 43200 > th dose independent sin 6 NA
524 474.25 humidity 60.0 14400 > th dose dependent sin 21 NA
556 474.57 wind 5.0 43200 < th dose dependent rect. 24 10
586 474.87 wind 3.0 43200 < th dose independent sin 7 NA
594 474.92 precipitation 0.1 14400 > th dose independent rect. 10 7
632 475.38 humidity 70.0 14400 < th dose independent sin 12 NA
645 475.54 precipitation 0.1 14400 > th dose independent rect. 2 16
653 475.64 precipitation 0.1 14400 < th dose independent rect. 10 7
654 475.64 precipitation 0.1 14400 < th dose dependent rect. 10 7
661 475.76 precipitation 0.1 14400 < th dose independent rect. 2 16
662 475.76 precipitation 0.1 14400 < th dose dependent rect. 2 16
668 475.83 humidity 70.0 14400 > th dose independent rect. 17 15
681 475.99 humidity 70.0 14400 > th dose independent rect. 15 17
682 475.99 humidity 80.0 14400 < th dose dependent sin 19 NA
693 476.14 humidity 70.0 14400 > th dose independent rect. 17 6
702 476.19 humidity 70.0 14400 > th dose independent rect. 17 12
704 476.21 humidity 70.0 14400 > th dose independent rect. 17 10
711 476.23 humidity 70.0 14400 > th dose independent rect. 11 1
726 476.40 humidity 70.0 14400 > th dose independent rect. 10 22
751 476.52 humidity 60.0 14400 > th dose independent rect. 12 7
769 476.61 humidity 70.0 14400 < th dose independent rect. 15 21
770 476.62 humidity 70.0 14400 > th dose independent rect. 15 14
771 476.63 humidity 70.0 14400 > th dose independent rect. 15 12
781 476.72 humidity 80.0 14400 > th dose independent sin 22 NA
789 476.75 humidity 60.0 14400 > th dose independent rect. 12 17
790 476.76 humidity 60.0 14400 > th dose independent rect. 12 15
793 476.76 humidity 60.0 14400 > th dose independent rect. 12 19
813 476.87 humidity 70.0 14400 > th dose independent rect. 10 19
822 476.90 precipitation 0.1 14400 > th dose independent rect. 2 19
823 476.90 humidity 70.0 14400 < th dose independent rect. 10 22
830 476.95 precipitation 0.1 14400 < th dose independent rect. 2 19
833 476.95 precipitation 0.1 14400 < th dose dependent rect. 2 19
887 477.30 precipitation 0.1 14400 > th dose dependent sin 3 NA
903 477.37 humidity 70.0 14400 > th dose independent sin 16 NA
963 477.66 humidity 70.0 14400 < th dose dependent sin 14 NA
983 477.83 precipitation 0.1 14400 < th dose independent rect. 23 23
985 477.83 precipitation 0.1 14400 < th dose dependent rect. 23 23
991 477.87 precipitation 0.1 14400 > th dose independent rect. 23 23
995 477.90 precipitation 0.1 14400 > th dose independent sin 1 NA