Os07g0585500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0585500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.79 | 0.348 | 13.1 | -0.274 | 0.632 | -0.818 | -0.143 | -1.41 | 0.0224 | 17.5 | 20.55 | 12 | -- | -- |
| 55.83 | 0.348 | 13.1 | -0.0483 | 0.683 | -0.936 | -0.328 | -- | 0.091 | 17.5 | 23.06 | 10 | -- | -- |
| 54.75 | 0.345 | 13.1 | -0.283 | 0.64 | -0.829 | -- | -1.51 | 0.0215 | 17.5 | 21.29 | 9 | -- | -- |
| 56.06 | 0.349 | 13.1 | -0.0456 | 0.68 | -0.943 | -- | -- | 0.0806 | 17.4 | 23.12 | 12 | -- | -- |
| 71.94 | 0.397 | 13.1 | -0.397 | -- | -0.451 | -- | -1.61 | -0.0621 | -- | 20.4 | 7 | -- | -- |
| 69.47 | 0.391 | 13.1 | -0.233 | 0.459 | -- | -0.459 | -- | -0.0603 | 19.3 | -- | -- | -- | -- |
| 70 | 0.392 | 13.1 | -0.224 | 0.457 | -- | -- | -- | -0.0617 | 19.5 | -- | -- | -- | -- |
| 74.43 | 0.402 | 13.1 | -0.127 | -- | -0.534 | -- | -- | 0.0174 | -- | 20.4 | 3 | -- | -- |
| 56.11 | 0.349 | 13.1 | -- | 0.684 | -0.954 | -- | -- | 0.085 | 17.4 | 23.1 | 12 | -- | -- |
| 81.16 | 0.421 | 13.1 | -0.231 | -- | -- | -- | -- | -0.0689 | -- | -- | -- | -- | -- |
| 71.32 | 0.395 | 13.1 | -- | 0.459 | -- | -- | -- | -0.0368 | 19.5 | -- | -- | -- | -- |
| 74.83 | 0.403 | 13.1 | -- | -- | -0.564 | -- | -- | 0.0354 | -- | 20.4 | 2 | -- | -- |
| 82.56 | 0.424 | 13.1 | -- | -- | -- | -- | -- | -0.0433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 54.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 3 | 54.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 5 | 54.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 11 | 54.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 20 | 54.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 28 | 54.89 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 31 | 54.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 34 | 54.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 100 | 55.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 127 | 55.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 140 | 55.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 5 |
| 141 | 55.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 147 | 55.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 162 | 55.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 166 | 55.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 182 | 55.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 232 | 56.17 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 237 | 56.18 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 242 | 56.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 272 | 56.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 275 | 56.27 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 319 | 56.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 327 | 56.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 348 | 56.40 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 379 | 56.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 395 | 56.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 469 | 56.66 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 21 |
| 516 | 56.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 541 | 56.78 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 575 | 56.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 653 | 56.94 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 714 | 57.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 724 | 57.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 840 | 57.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 878 | 57.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 910 | 57.30 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 956 | 57.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |