Os07g0584200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NPH3 domain containing protein.
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Os07g0584200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NPH3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.59 | 0.584 | 7.49 | 2.26 | 0.786 | 3.02 | -1.81 | 6.56 | 0.253 | 23.9 | 1.269 | 24765 | -- | -- |
| 165.91 | 0.6 | 7.27 | 3.27 | 1.39 | 2.52 | -2.04 | -- | 0.7 | 23.9 | 4.484 | 29908 | -- | -- |
| 155.5 | 0.581 | 7.48 | 2.04 | 1.27 | 2.97 | -- | 6.78 | 0.239 | 0.004 | 1.785 | 24157 | -- | -- |
| 165.66 | 0.599 | 7.2 | 3.52 | 1.25 | 2.59 | -- | -- | 0.775 | 23.8 | 4.281 | 31375 | -- | -- |
| 205.81 | 0.668 | 7.47 | 2.63 | -- | 2.91 | -- | 5.94 | 0.286 | -- | 1.992 | 30587 | -- | -- |
| 292.39 | 0.802 | 7.39 | 2.35 | 0.974 | -- | -1.38 | -- | -0.176 | 0.309 | -- | -- | -- | -- |
| 300.59 | 0.812 | 7.39 | 2.41 | 0.98 | -- | -- | -- | -0.17 | 0.463 | -- | -- | -- | -- |
| 211.11 | 0.677 | 7.17 | 4.11 | -- | 2.44 | -- | -- | 0.824 | -- | 3.832 | 46402 | -- | -- |
| 343.99 | 0.864 | 7.28 | -- | 1.12 | 2.49 | -- | -- | 0.303 | 23.7 | 10.56 | 29569 | -- | -- |
| 360.87 | 0.888 | 7.37 | 2.44 | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
| 453.37 | 0.996 | 7.45 | -- | 1.02 | -- | -- | -- | -0.438 | 0.582 | -- | -- | -- | -- |
| 391.37 | 0.921 | 7.27 | -- | -- | 2.47 | -- | -- | 0.232 | -- | 9.994 | 30632 | -- | -- |
| 518.08 | 1.06 | 7.43 | -- | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 2 | 145.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 3 | 145.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 4 | 145.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 20 | 146.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 50 | 147.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 53 | 147.68 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 54 | 147.68 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 132 | 150.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 148 | 150.92 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 150 | 151.03 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 152 | 151.18 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 171 | 151.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 172 | 151.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 173 | 151.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 174 | 151.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 185 | 152.44 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 186 | 152.52 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 204 | 152.76 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 210 | 152.78 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 212 | 152.80 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 219 | 153.22 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 221 | 153.28 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 233 | 153.34 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 245 | 153.38 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 249 | 153.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 255 | 153.59 | humidity | 80.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 293 | 153.82 | radiation | 1.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 298 | 153.87 | radiation | 1.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 305 | 153.93 | humidity | 80.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 323 | 154.06 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 327 | 154.10 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 343 | 154.13 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 353 | 154.19 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 357 | 154.20 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 388 | 154.34 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 462 | 154.55 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 466 | 154.57 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 485 | 154.65 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 487 | 154.66 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 528 | 154.79 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 592 | 154.92 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 598 | 154.93 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 626 | 155.03 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 638 | 155.08 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 650 | 155.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 722 | 155.31 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 775 | 155.51 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 820 | 155.68 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 875 | 155.90 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 881 | 155.94 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 885 | 155.97 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 886 | 155.97 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 888 | 155.97 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 922 | 156.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 950 | 156.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 952 | 156.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 981 | 156.32 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |