Os07g0584100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP kinase-like protein.
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Os07g0584100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.15 | 0.352 | 9.72 | 0.304 | 1.6 | -1.9 | 0.25 | 1.14 | -0.0699 | 2.75 | 21.28 | 10 | -- | -- |
| 56.47 | 0.353 | 9.74 | 0.103 | 1.61 | -1.83 | -0.0528 | -- | -0.13 | 2.78 | 21.1 | 12 | -- | -- |
| 56.03 | 0.351 | 9.72 | 0.249 | 1.6 | -1.9 | -- | 0.866 | -0.0859 | 2.79 | 21.28 | 10 | -- | -- |
| 56.48 | 0.352 | 9.74 | 0.103 | 1.61 | -1.83 | -- | -- | -0.13 | 2.78 | 21.1 | 12 | -- | -- |
| 151.61 | 0.577 | 9.65 | 0.728 | -- | -3.41 | -- | 1.67 | 0.227 | -- | 21.2 | 12 | -- | -- |
| 107.72 | 0.487 | 9.81 | -0.261 | 2.3 | -- | 0.376 | -- | -0.434 | 2.67 | -- | -- | -- | -- |
| 108.21 | 0.487 | 9.81 | -0.271 | 2.3 | -- | -- | -- | -0.436 | 2.67 | -- | -- | -- | -- |
| 154 | 0.578 | 9.68 | 0.464 | -- | -3.32 | -- | -- | 0.15 | -- | 21.32 | 11 | -- | -- |
| 56.75 | 0.353 | 9.74 | -- | 1.63 | -1.79 | -- | -- | -0.146 | 2.77 | 21.1 | 12 | -- | -- |
| 417.89 | 0.955 | 9.8 | -0.173 | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
| 110.15 | 0.491 | 9.8 | -- | 2.3 | -- | -- | -- | -0.406 | 2.67 | -- | -- | -- | -- |
| 159.14 | 0.588 | 9.71 | -- | -- | -3.19 | -- | -- | 0.0184 | -- | 23.12 | 9 | -- | -- |
| 418.68 | 0.955 | 9.79 | -- | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 93 | 54.99 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 21 |
| 135 | 57.24 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 23 |
| 138 | 57.32 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 140 | 57.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 147 | 57.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 149 | 57.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 171 | 58.46 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 23 |
| 172 | 58.52 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 23 |
| 195 | 59.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 197 | 59.29 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 202 | 59.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 220 | 59.84 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 237 | 60.15 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 239 | 60.18 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 23 |
| 241 | 60.21 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 18 |
| 242 | 60.22 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 23 |
| 246 | 60.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 250 | 60.34 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 23 |
| 263 | 60.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 265 | 60.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 269 | 60.51 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 273 | 60.57 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 23 |
| 275 | 60.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 291 | 61.03 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 23 |
| 295 | 61.06 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 23 |
| 301 | 61.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 302 | 61.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 305 | 61.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 306 | 61.23 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 23 |
| 312 | 61.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 317 | 61.36 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 23 |
| 326 | 61.48 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 328 | 61.50 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 23 |
| 330 | 61.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 337 | 61.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 350 | 61.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 365 | 62.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 366 | 62.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 370 | 62.12 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 379 | 62.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 385 | 62.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 388 | 62.46 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 23 |
| 412 | 62.81 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 419 | 62.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 435 | 63.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 449 | 63.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 617 | 65.12 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 690 | 65.78 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 13 |
| 919 | 67.63 | temperature | 25 | 90 | < th | dose independent | sin | 23 | NA |
| 929 | 67.68 | temperature | 25 | 90 | > th | dose independent | sin | 23 | NA |
| 976 | 67.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 980 | 67.99 | temperature | 25 | 10 | < th | dose independent | sin | 22 | NA |