Os07g0583700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 78.
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Os07g0583700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 78.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.86 | 0.209 | 10.4 | 1.25 | 0.128 | -0.548 | -0.099 | 1.22 | 0.349 | 0.0313 | 25.79 | 75 | -- | -- |
| 20.22 | 0.211 | 10.4 | 1.12 | 0.123 | -0.465 | -0.218 | -- | 0.319 | 1.08 | 25.79 | 75 | -- | -- |
| 19.86 | 0.209 | 10.4 | 1.25 | 0.111 | -0.562 | -- | 1.25 | 0.351 | 0.957 | 25.8 | 74 | -- | -- |
| 20.37 | 0.21 | 10.4 | 1.13 | 0.135 | -0.419 | -- | -- | 0.348 | 0.094 | 23.79 | 99 | -- | -- |
| 20.42 | 0.212 | 10.4 | 1.28 | -- | -0.67 | -- | 1.42 | 0.361 | -- | 25.8 | 74 | -- | -- |
| 23.45 | 0.227 | 10.4 | 1.05 | 0.28 | -- | -0.108 | -- | 0.298 | 2 | -- | -- | -- | -- |
| 23.49 | 0.227 | 10.4 | 1.06 | 0.28 | -- | -- | -- | 0.298 | 2.02 | -- | -- | -- | -- |
| 21.11 | 0.215 | 10.4 | 1.17 | -- | -0.54 | -- | -- | 0.389 | -- | 21.47 | 78 | -- | -- |
| 52.36 | 0.339 | 10.4 | -- | 0.255 | -0.231 | -- | -- | 0.176 | 1.94 | 28.49 | 14 | -- | -- |
| 28.2 | 0.248 | 10.4 | 1.07 | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
| 52.95 | 0.34 | 10.4 | -- | 0.3 | -- | -- | -- | 0.18 | 2.11 | -- | -- | -- | -- |
| 54.81 | 0.346 | 10.4 | -- | -- | -0.391 | -- | -- | 0.197 | -- | 25.7 | 11 | -- | -- |
| 58.33 | 0.356 | 10.4 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 6 | 18.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 8 | 18.99 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 11 | 19.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 16 | 19.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 22 | 19.12 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 38 | 19.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 44 | 19.25 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 77 | 19.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 80 | 19.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 81 | 19.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 86 | 19.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 109 | 19.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 124 | 19.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 365 | 19.81 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 427 | 19.88 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 428 | 19.88 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 450 | 19.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 475 | 19.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 477 | 19.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 2 | 22 |
| 484 | 19.93 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 498 | 19.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 506 | 19.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 549 | 19.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 566 | 19.97 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 579 | 19.98 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 608 | 19.99 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 618 | 19.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 658 | 20.01 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 676 | 20.02 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |