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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0582900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0458) R2 : 0.0205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.298 (0.0964) R2dN8 : 0.0264 R2N8 : 0.0205
σ : 0.863
deviance : 341.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.49 0.846 3.36 0.185 0.215 -0.644 0.274 0.0957 -0.305 2.9 48.03 1300 -- --
324.47 0.839 3.36 0.196 0.208 -0.65 0.266 -- -0.302 3.01 47 1282 -- --
324.69 0.839 3.37 0.184 0.21 -0.661 -- 0.0283 -0.306 3.25 47 1283 -- --
324.69 0.839 3.36 0.188 0.21 -0.659 -- -- -0.305 3.28 47 1282 -- --
326.81 0.842 3.37 0.193 -- -0.756 -- 0.0721 -0.304 -- 48.01 1226 -- --
333.81 0.857 3.36 0.238 0.31 -- 0.369 -- -0.277 2.58 -- -- -- --
334.29 0.856 3.36 0.228 0.313 -- -- -- -0.279 2.75 -- -- -- --
326.8 0.842 3.36 0.19 -- -0.763 -- -- -0.303 -- 47 1224 -- --
325.61 0.84 3.37 -- 0.215 -0.666 -- -- -0.325 3.31 46.01 1282 -- --
339.98 0.862 3.36 0.241 -- -- -- -- -0.271 -- -- -- -- --
335.66 0.857 3.36 -- 0.317 -- -- -- -0.304 2.76 -- -- -- --
327.74 0.843 3.37 -- -- -0.787 -- -- -0.323 -- 45 1223 -- --
341.51 0.863 3.36 -- -- -- -- -- -0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.77 wind 1.0 270 < th dose dependent rect. 20 1
4 314.57 wind 1.0 270 < th dose dependent rect. 15 7
6 314.90 wind 1.0 270 < th dose dependent rect. 16 5
15 316.52 wind 1.0 270 < th dose independent rect. 20 1
16 316.63 atmosphere 1000.0 90 < th dose independent rect. 21 3
18 316.95 atmosphere 1005.0 90 > th dose independent rect. 17 3
19 317.27 atmosphere 1005.0 90 > th dose independent rect. 18 1
20 317.91 wind 9.0 90 < th dose dependent rect. 17 15
21 317.92 atmosphere 1000.0 90 > th dose dependent rect. 18 1
22 318.06 atmosphere 1000.0 10 < th dose independent rect. 21 4
24 318.06 humidity 70.0 4320 > th dose independent rect. 21 6
25 318.09 atmosphere 1000.0 30 > th dose independent rect. 20 6
26 318.10 atmosphere 1000.0 10 < th dose independent rect. 22 2
35 318.35 wind 3.0 10 > th dose independent rect. 19 1
47 318.83 atmosphere 1000.0 90 < th dose independent rect. 22 1
68 319.57 wind 1.0 270 < th dose independent rect. 15 7
74 319.70 atmosphere 1000.0 270 > th dose independent rect. 15 5
77 319.74 atmosphere 995.0 270 > th dose dependent rect. 15 4
80 319.82 wind 5.0 90 < th dose independent rect. 17 15
84 319.90 wind 1.0 10 > th dose dependent rect. 19 1
88 319.96 precipitation 0.1 270 < th dose independent rect. 15 14
89 319.96 precipitation 0.1 270 < th dose dependent rect. 15 14
90 319.97 temperature 25.0 30 > th dose independent rect. 7 1
112 320.40 wind 1.0 270 > th dose dependent rect. 20 7
124 320.54 wind 1.0 30 > th dose dependent rect. 20 9
125 320.55 radiation 1.0 90 < th dose dependent rect. 18 1
129 320.57 wind 5.0 90 < th dose dependent rect. 2 7
142 320.72 wind 1.0 30 > th dose dependent rect. 20 11
151 320.87 wind 3.0 90 < th dose independent rect. 2 7
152 320.87 radiation 1.0 4320 < th dose dependent rect. 19 2
161 321.04 radiation 1.0 90 < th dose independent rect. 18 1
164 321.07 wind 5.0 90 < th dose dependent rect. 2 9
168 321.11 humidity 50.0 14400 > th dose independent rect. 19 2
171 321.14 radiation 40.0 90 < th dose dependent rect. 17 16
174 321.16 precipitation 0.1 270 < th dose independent rect. 23 23
176 321.16 precipitation 0.1 270 < th dose dependent rect. 23 23
182 321.19 atmosphere 1000.0 270 > th dose independent rect. 21 3
185 321.20 temperature 30.0 10 < th dose independent rect. 18 2
193 321.25 atmosphere 995.0 90 > th dose dependent rect. 20 6
195 321.27 precipitation 0.1 90 < th dose independent rect. 18 1
197 321.27 precipitation 0.1 90 < th dose dependent rect. 18 1
200 321.29 radiation 1.0 10 < th dose dependent rect. 5 15
202 321.31 wind 7.0 90 < th dose independent rect. 18 1
207 321.35 wind 9.0 1440 < th dose independent rect. 19 1
215 321.37 radiation 30.0 90 < th dose dependent rect. 17 18
216 321.38 atmosphere 995.0 270 > th dose independent rect. 15 14
221 321.41 precipitation 0.1 270 < th dose independent rect. 2 18
222 321.41 precipitation 0.1 270 < th dose dependent rect. 2 18
225 321.43 atmosphere 1000.0 10 < th dose independent rect. 21 12
230 321.44 radiation 1.0 10 < th dose dependent rect. 15 5
237 321.46 radiation 20.0 30 < th dose dependent rect. 7 13
239 321.47 temperature 10.0 90 > th dose independent rect. 18 1
241 321.47 humidity 50.0 90 > th dose independent rect. 18 1
242 321.47 atmosphere 1010.0 90 < th dose independent rect. 18 1
248 321.47 temperature 10.0 90 > th dose independent rect. 19 23
258 321.50 radiation 1.0 10 < th dose dependent rect. 11 9
277 321.58 radiation 10.0 43200 < th dose dependent rect. 19 2
289 321.63 wind 3.0 30 < th dose independent rect. 7 1
294 321.65 wind 3.0 270 < th dose independent rect. 24 9
296 321.65 temperature 25.0 720 > th dose dependent rect. 18 1
300 321.66 wind 1.0 270 > th dose dependent rect. 20 11
315 321.71 wind 9.0 90 < th dose dependent rect. 2 18
316 321.71 radiation 20.0 30 < th dose dependent rect. 2 18
319 321.74 wind 3.0 270 > th dose independent rect. 20 8
320 321.74 precipitation 0.1 270 < th dose independent rect. 1 20
321 321.74 wind 9.0 270 < th dose dependent rect. 15 4
323 321.74 precipitation 0.1 270 < th dose dependent rect. 1 20
330 321.76 atmosphere 995.0 270 > th dose independent rect. 2 18
343 321.83 wind 3.0 90 < th dose independent rect. 2 9
350 321.85 temperature 30.0 10 < th dose independent rect. 18 15
352 321.86 radiation 10.0 30 < th dose independent rect. 7 13
353 321.86 humidity 60.0 30 > th dose independent rect. 18 14
360 321.89 temperature 10.0 43200 > th dose independent rect. 10 9
362 321.90 temperature 10.0 1440 > th dose independent rect. 9 10
365 321.90 temperature 10.0 1440 > th dose independent rect. 19 14
368 321.90 humidity 50.0 1440 > th dose independent rect. 19 14
370 321.90 atmosphere 995.0 1440 > th dose independent rect. 19 14
376 321.91 humidity 70.0 720 > th dose dependent rect. 19 2
390 321.96 humidity 70.0 720 > th dose independent rect. 19 7
393 321.96 wind 9.0 90 < th dose dependent rect. 18 1
394 321.96 temperature 30.0 90 < th dose dependent rect. 20 7
396 321.97 temperature 10.0 1440 > th dose independent rect. 19 2
399 321.97 temperature 30.0 1440 < th dose independent rect. 19 2
403 321.97 humidity 50.0 1440 > th dose independent rect. 19 2
405 321.97 atmosphere 995.0 1440 > th dose independent rect. 19 2
409 321.97 radiation 1.0 1440 < th dose independent rect. 19 2
430 321.97 temperature 10.0 1440 > th dose independent rect. 21 22
444 321.99 wind 3.0 90 < th dose dependent rect. 2 20
449 322.01 wind 5.0 270 < th dose dependent rect. 24 8
453 322.04 humidity 60.0 10 > th dose independent rect. 18 2
455 322.05 atmosphere 995.0 90 > th dose independent rect. 17 15
456 322.05 humidity 90.0 720 > th dose dependent rect. 22 1
457 322.05 wind 9.0 90 < th dose dependent rect. 2 21
461 322.06 humidity 50.0 90 > th dose dependent rect. 20 6
467 322.07 radiation 20.0 90 < th dose independent rect. 2 9
477 322.13 wind 5.0 270 < th dose independent rect. 15 4
478 322.13 wind 3.0 270 > th dose independent rect. 20 11
479 322.14 atmosphere 1010.0 30 < th dose independent rect. 2 6
484 322.16 wind 1.0 90 > th dose independent rect. 8 9
490 322.20 radiation 20.0 90 < th dose independent rect. 17 15
491 322.20 temperature 15.0 90 > th dose independent rect. 2 18
500 322.21 wind 9.0 90 < th dose independent rect. 19 23
504 322.22 wind 7.0 30 < th dose independent rect. 2 18
519 322.25 temperature 10.0 1440 > th dose independent rect. 21 6
522 322.25 temperature 30.0 1440 < th dose independent rect. 21 6
526 322.25 humidity 50.0 1440 > th dose independent rect. 21 6
532 322.25 atmosphere 995.0 1440 > th dose independent rect. 21 6
533 322.25 radiation 1.0 1440 < th dose independent rect. 21 6
557 322.25 temperature 10.0 1440 > th dose independent rect. 3 18
568 322.26 humidity 50.0 90 > th dose dependent rect. 18 1
570 322.27 precipitation 0.1 270 < th dose independent rect. 15 5
573 322.27 precipitation 0.1 270 < th dose dependent rect. 15 5
574 322.27 radiation 40.0 1440 < th dose dependent rect. 21 6
591 322.32 atmosphere 1000.0 10 < th dose independent rect. 21 7
620 322.37 humidity 50.0 720 > th dose dependent rect. 19 6
645 322.43 temperature 10.0 30 > th dose independent rect. 20 6
646 322.43 temperature 30.0 30 < th dose independent rect. 20 6
647 322.43 humidity 50.0 30 > th dose independent rect. 20 6
651 322.43 radiation 1.0 30 < th dose independent rect. 20 6
659 322.43 atmosphere 1015.0 30 < th dose independent rect. 2 18
661 322.43 radiation 10.0 30 < th dose dependent rect. 20 6
682 322.44 humidity 90.0 720 > th dose dependent rect. 20 4
691 322.44 wind 5.0 10 < th dose dependent rect. 3 9
695 322.45 wind 3.0 30 > th dose independent rect. 20 22
697 322.45 radiation 40.0 14400 < th dose dependent rect. 21 6
704 322.48 wind 9.0 90 < th dose independent rect. 20 6
738 322.52 radiation 1.0 90 > th dose independent rect. 8 9
740 322.53 temperature 15.0 90 > th dose independent rect. 17 15
751 322.55 temperature 10.0 90 > th dose independent rect. 8 9
752 322.55 atmosphere 1015.0 90 < th dose independent rect. 8 9
762 322.56 temperature 20.0 30 > th dose dependent rect. 7 1
776 322.61 temperature 10.0 270 > th dose independent rect. 5 10
777 322.61 atmosphere 1015.0 270 < th dose independent rect. 5 10
778 322.61 temperature 10.0 270 > th dose independent rect. 15 14
788 322.63 radiation 40.0 90 < th dose independent rect. 17 15
796 322.65 humidity 50.0 90 > th dose independent rect. 2 18
798 322.65 radiation 1.0 10 < th dose dependent sin 23 NA
802 322.66 wind 1.0 30 > th dose dependent rect. 20 22
805 322.67 wind 7.0 90 < th dose independent rect. 8 9
807 322.67 radiation 10.0 30 < th dose independent rect. 2 18
814 322.68 atmosphere 1005.0 30 > th dose independent rect. 16 7
826 322.70 radiation 20.0 90 < th dose independent rect. 17 18
828 322.70 wind 1.0 270 > th dose dependent rect. 21 1
834 322.71 radiation 40.0 270 < th dose independent rect. 15 14
841 322.72 humidity 70.0 90 > th dose independent rect. 2 9
842 322.72 wind 9.0 270 < th dose independent rect. 5 10
859 322.76 wind 3.0 270 > th dose independent rect. 20 5
869 322.77 atmosphere 1010.0 90 < th dose independent rect. 17 15
875 322.78 humidity 90.0 720 < th dose dependent rect. 17 4
884 322.80 humidity 90.0 720 > th dose independent rect. 21 2
885 322.80 humidity 80.0 720 < th dose independent rect. 17 4
922 322.83 precipitation 0.1 90 < th dose independent rect. 20 6
926 322.83 precipitation 0.1 90 < th dose dependent rect. 20 6
976 322.90 temperature 10.0 90 > th dose dependent rect. 2 6